Sodium in PDB 4c6s: Crystal Structure of the Tir Domain From the Arabidopsis Thaliana Disease Resistance Protein RRS1

The structure of Crystal Structure of the Tir Domain From the Arabidopsis Thaliana Disease Resistance Protein RRS1, PDB code: 4c6s was solved by L.Wan, S.J.Williams, K.H.Sohn, M.Bernoux, Y.Ma, C.Segonzac, T.Ve, P.Sarris, D.J.Ericsson, S.B.Saucet, X.Zhang, J.Parker, P.N.Dodds, J.D.G.Jones, B.Kobe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.632 / 1.75
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.265, 71.265, 66.724, 90.00, 90.00, 90.00
R / Rfree (%)	18.21 / 19.81

The binding sites of Sodium atom in the Crystal Structure of the Tir Domain From the Arabidopsis Thaliana Disease Resistance Protein RRS1 (pdb code 4c6s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Tir Domain From the Arabidopsis Thaliana Disease Resistance Protein RRS1, PDB code: 4c6s:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Tir Domain From the Arabidopsis Thaliana Disease Resistance Protein RRS1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Tir Domain From the Arabidopsis Thaliana Disease Resistance Protein RRS1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1155 b:33.6 occ:0.84 OE1 A:GLU137 2.6 30.5 1.0 O1 A:SO41154 2.7 34.6 1.0 ND1 A:HIS123 2.7 25.0 1.0 CB A:GLU137 3.3 21.3 1.0 CD A:GLU137 3.4 31.5 1.0 O2 A:SO41154 3.4 62.5 1.0 S A:SO41154 3.6 55.3 1.0 CG A:HIS123 3.6 21.8 1.0 CE1 A:HIS123 3.7 30.0 1.0 CB A:HIS123 3.8 21.6 1.0 CG A:GLU137 3.9 24.4 1.0 O A:HOH2043 4.0 47.0 1.0 CD1 A:LEU134 4.1 21.0 1.0 CA A:HIS123 4.2 22.7 1.0 OE2 A:GLU137 4.2 28.9 1.0 O4 A:SO41154 4.3 52.7 1.0 N A:GLN124 4.6 23.5 1.0 CA A:GLU137 4.7 21.5 1.0 O3 A:SO41154 4.8 59.6 1.0 CD2 A:HIS123 4.8 22.9 1.0 NE2 A:HIS123 4.8 24.3 1.0 O A:HOH2021 4.8 40.1 1.0 C A:GLU137 4.9 19.7 1.0 C A:HIS123 4.9 26.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Tir Domain From the Arabidopsis Thaliana Disease Resistance Protein RRS1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Tir Domain From the Arabidopsis Thaliana Disease Resistance Protein RRS1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1156 b:48.5 occ:1.00 OE1 A:GLU29 2.4 46.8 1.0 O A:HOH2010 3.1 35.5 1.0 CA A:GLU29 3.4 23.7 1.0 CB A:GLU29 3.5 31.8 1.0 CD A:GLU29 3.6 47.2 1.0 NE A:ARG32 3.8 44.0 1.0 N A:GLU29 3.9 18.4 1.0 CD A:ARG32 4.0 43.0 1.0 CG A:GLU29 4.1 37.4 1.0 C A:SER28 4.3 21.7 1.0 OG A:SER28 4.3 25.9 1.0 O A:SER28 4.3 22.7 1.0 CB A:ARG32 4.6 28.6 1.0 OE2 A:GLU29 4.6 53.6 1.0 C A:GLU29 4.7 24.9 1.0 CB A:SER28 4.9 21.7 1.0 CZ A:ARG32 4.9 46.6 1.0 CG A:ARG32 4.9 41.8 1.0 O A:GLU29 4.9 23.9 1.0 O A:SER25 5.0 20.3 1.0

S.J.Williams, K.H.Sohn, L.Wan, M.Bernoux, P.F.Sarris, C.Segonzac, T.Ve, Y.Ma, S.B.Saucet, D.J.Ericsson, L.W.Casey, T.Lonhienne, D.J.Winzor, X.Zhang, A.Coerdt, J.E.Parker, P.N.Dodds, B.Kobe, J.D.G.Jones. Structural Basis For Assembly and Function of A Heterodimeric Plant Immune Receptor. Science V. 344 299 2014.
ISSN: ISSN 0036-8075
PubMed: 24744375
DOI: 10.1126/SCIENCE.1247357