Atomistry » Sodium » PDB 3zux-4adj » 4aax
Atomistry »
  Sodium »
    PDB 3zux-4adj »
      4aax »

Sodium in PDB 4aax: CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine

Enzymatic activity of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine

All present enzymatic activity of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine:
3.2.1.50;

Protein crystallography data

The structure of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine, PDB code: 4aax was solved by E.Ficko-Blean, C.P.Stuart, M.D.Suits, M.Cid, M.Tessier, R.J.Woods, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.815, 37.268, 57.410, 90.00, 103.51, 90.00
R / Rfree (%) 20.449 / 26.491

Other elements in 4aax:

The structure of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine (pdb code 4aax). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine, PDB code: 4aax:

Sodium binding site 1 out of 1 in 4aax

Go back to Sodium Binding Sites List in 4aax
Sodium binding site 1 out of 1 in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with N-Acetylgalactosamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na2495

b:56.7
occ:1.00
OE2 A:GLU1478 3.0 45.1 1.0
CD A:GLU1478 4.0 44.0 1.0
NZ A:LYS1433 4.3 38.4 1.0
OE1 A:GLU1478 4.6 46.6 1.0

Reference:

E.Ficko-Blean, C.P.Stuart, M.D.Suits, M.Cid, M.Tessier, R.J.Woods, A.B.Boraston. Carbohydrate Recognition By An Architecturally Complex Alpha-N-Acetylglucosaminidase From Clostridium Perfringens. Plos One V. 7 33524 2012.
ISSN: ISSN 1932-6203
PubMed: 22479408
DOI: 10.1371/JOURNAL.PONE.0033524
Page generated: Mon Oct 7 14:19:16 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy