Atomistry » Sodium » PDB 3zux-4adj » 4a45
Atomistry »
  Sodium »
    PDB 3zux-4adj »
      4a45 »

Sodium in PDB 4a45: CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose

Enzymatic activity of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose

All present enzymatic activity of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose:
3.2.1.50;

Protein crystallography data

The structure of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose, PDB code: 4a45 was solved by E.Ficko-Blean, C.P.Stuart, M.D.Suits, M.Cid, M.Tessier, R.J.Woods, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.13 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.803, 58.631, 70.658, 90.00, 90.00, 90.00
R / Rfree (%) 19.855 / 24.571

Other elements in 4a45:

The structure of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose (pdb code 4a45). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose, PDB code: 4a45:

Sodium binding site 1 out of 1 in 4a45

Go back to Sodium Binding Sites List in 4a45
Sodium binding site 1 out of 1 in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galnac-Beta-1,3-Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na2497

b:5.9
occ:1.00
 NE2 A:HIS1471 2.1 19.5 1.0
OE1 A:GLU1408 2.2 22.4 1.0
O A:HOH2065 2.7 12.8 0.5
O A:HOH2065 2.8 16.0 0.5
CE1 A:HIS1471 3.1 17.5 1.0
CD2 A:HIS1471 3.1 17.6 1.0
CD A:GLU1408 3.2 20.4 1.0
CG A:GLU1408 3.5 16.9 1.0
CB A:GLU1408 3.8 16.9 1.0
ND1 A:HIS1471 4.2 15.9 1.0
CG A:HIS1471 4.2 18.5 1.0
OE2 A:GLU1408 4.2 24.5 1.0
O A:HOH2102 4.4 33.4 1.0
CA A:GLY1442 4.7 23.3 1.0
CA A:GLU1408 4.9 16.5 1.0

Reference:

E.Ficko-Blean, C.P.Stuart, M.D.Suits, M.Cid, M.Tessier, R.J.Woods, A.B.Boraston. Carbohydrate Recognition By An Architecturally Complex Alpha-N-Acetylglucosaminidase From Clostridium Perfringens. Plos One V. 7 33524 2012.
ISSN: ISSN 1932-6203
PubMed: 22479408
DOI: 10.1371/JOURNAL.PONE.0033524
Page generated: Mon Oct 7 14:18:02 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy