Sodium in PDB 4a3r: Crystal Structure of Enolase From Bacillus Subtilis.

All present enzymatic activity of Crystal Structure of Enolase From Bacillus Subtilis.:
4.2.1.11;

The structure of Crystal Structure of Enolase From Bacillus Subtilis., PDB code: 4a3r was solved by J.A.Newman, L.Hewitt, C.Rodrigues, A.S.Solovyova, C.R.Harwood, R.J.Lewis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.830 / 2.20
Space group	P 4
Cell size a, b, c (Å), α, β, γ (°)	187.074, 187.074, 56.501, 90.00, 90.00, 90.00
R / Rfree (%)	17.38 / 21.77

The binding sites of Sodium atom in the Crystal Structure of Enolase From Bacillus Subtilis. (pdb code 4a3r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Enolase From Bacillus Subtilis., PDB code: 4a3r:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Enolase From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Enolase From Bacillus Subtilis. within 5.0Å range: probe atom residue distance (Å) B Occ D:Na1430 b:34.5 occ:1.00 HO7 D:CIT1429 2.5 41.5 1.0 OE2 D:GLU287 2.6 29.6 1.0 OD2 D:ASP242 2.7 32.0 1.0 OD2 D:ASP314 2.7 26.5 1.0 O D:HOH2138 2.7 26.9 1.0 O D:HOH2161 3.0 37.4 1.0 O6 D:CIT1429 3.0 31.4 1.0 O D:HOH2113 3.1 37.1 1.0 O7 D:CIT1429 3.4 34.8 1.0 CG D:ASP242 3.5 31.9 1.0 CG D:ASP314 3.5 30.5 1.0 CD D:GLU287 3.6 31.7 1.0 C6 D:CIT1429 3.7 41.4 1.0 OD1 D:ASP242 3.7 25.4 1.0 NZ D:LYS390 3.8 31.4 1.0 CB D:ASP314 4.0 28.3 1.0 NZ D:LYS339 4.0 26.6 1.0 CD2 D:LEU337 4.0 24.6 1.0 C3 D:CIT1429 4.2 42.1 1.0 OE1 D:GLU287 4.3 30.0 1.0 OD2 D:ASP288 4.4 28.7 1.0 CG D:GLU287 4.4 26.3 1.0 OD1 D:ASP314 4.5 27.7 1.0 O5 D:CIT1429 4.5 37.3 1.0 CB D:ASP242 4.7 30.9 1.0 CE D:LYS339 4.8 28.6 1.0 H41 D:CIT1429 4.8 47.6 1.0 OE2 D:GLU164 4.9 50.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Enolase From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Enolase From Bacillus Subtilis. within 5.0Å range: probe atom residue distance (Å) B Occ D:Na1431 b:41.6 occ:1.00 O D:HOH2040 2.3 32.6 1.0 O D:HOH2033 2.6 40.5 1.0 O1 D:CIT1429 2.8 30.4 1.0 O D:SER42 2.8 37.3 1.0 O D:HOH2161 2.9 37.4 1.0 O3 D:CIT1429 3.1 48.3 1.0 O7 D:CIT1429 3.2 34.8 1.0 C D:SER42 3.4 38.8 1.0 HO7 D:CIT1429 3.6 41.5 1.0 C5 D:CIT1429 3.8 44.9 1.0 O D:HOH2113 3.9 37.1 1.0 C1 D:CIT1429 3.9 34.8 1.0 OD1 D:ASP315 4.0 30.9 1.0 NZ D:LYS339 4.0 26.6 1.0 CB D:SER42 4.0 41.3 1.0 N D:THR43 4.0 36.5 1.0 NH2 D:ARG368 4.0 28.4 1.0 O D:HOH2112 4.1 41.0 1.0 CA D:SER42 4.2 42.1 1.0 O4 D:CIT1429 4.2 45.6 1.0 OD2 D:ASP315 4.3 36.0 1.0 CA D:THR43 4.3 33.2 1.0 C3 D:CIT1429 4.4 42.1 1.0 OE2 D:GLU47 4.4 32.3 1.0 OD2 D:ASP314 4.5 26.5 1.0 N D:GLY44 4.5 38.1 1.0 N D:SER42 4.6 37.8 1.0 CG D:ASP315 4.6 35.3 1.0 O2 D:CIT1429 4.6 41.9 1.0 C D:THR43 4.6 37.1 1.0 C2 D:CIT1429 4.7 36.9 1.0 C4 D:CIT1429 4.8 39.9 1.0

J.A.Newman, L.Hewitt, C.Rodrigues, A.S.Solovyova, C.R.Harwood, R.J.Lewis. Dissection of the Network of Interactions That Links Rna Processing with Glycolysis in the Bacillus Subtilis Degradosome. J.Mol.Biol. V. 416 121 2012.
ISSN: ISSN 0022-2836
PubMed: 22198292
DOI: 10.1016/J.JMB.2011.12.024