Sodium in PDB 4a1r: The Structure of Serratia Marcescens Lip, A Membrane Bound Component of the Type VI Secretion System.

The structure of The Structure of Serratia Marcescens Lip, A Membrane Bound Component of the Type VI Secretion System., PDB code: 4a1r was solved by V.A.Rao, S.M.Shepherd, G.English, S.J.Coulthurst, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.82 / 1.92
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	139.730, 77.750, 54.490, 90.00, 98.31, 90.00
R / Rfree (%)	22.036 / 29.158

The binding sites of Sodium atom in the The Structure of Serratia Marcescens Lip, A Membrane Bound Component of the Type VI Secretion System. (pdb code 4a1r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of Serratia Marcescens Lip, A Membrane Bound Component of the Type VI Secretion System., PDB code: 4a1r:

Sodium binding site 1 out of 1 in the The Structure of Serratia Marcescens Lip, A Membrane Bound Component of the Type VI Secretion System.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of Serratia Marcescens Lip, A Membrane Bound Component of the Type VI Secretion System. within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1176 b:37.8 occ:1.00 O A:HOH2082 2.3 34.8 1.0 O A:HOH2079 2.4 36.7 1.0 O C:HOH2028 2.5 37.4 1.0 O C:SER94 2.5 38.9 1.0 OD1 C:ASP95 2.6 34.5 1.0 O A:HOH2088 2.6 36.9 1.0 NZ A:LYS106 3.3 44.0 1.0 CG C:ASP95 3.3 34.4 1.0 O C:HOH2029 3.3 43.4 1.0 OD2 C:ASP95 3.5 35.2 1.0 C C:SER94 3.7 40.4 1.0 OD1 C:ASP93 3.8 45.5 1.0 O A:HOH2080 4.3 50.3 1.0 O A:PHE98 4.3 28.7 1.0 O A:HOH2078 4.4 32.5 1.0 CA C:ASP95 4.4 33.7 1.0 N C:ASP95 4.4 31.1 1.0 CB C:ASP95 4.4 34.0 1.0 OG1 A:THR100 4.5 35.1 1.0 CG C:ASP93 4.5 48.6 1.0 N C:SER94 4.5 34.5 1.0 O A:HOH2081 4.5 38.3 1.0 OD2 C:ASP93 4.5 42.3 1.0 O A:HOH2033 4.6 37.8 1.0 CE A:LYS106 4.6 41.5 1.0 CA C:SER94 4.7 40.9 1.0 O C:HOH2030 4.7 48.1 1.0 NE2 A:GLN103 4.8 47.2 1.0 O A:HOH2034 4.9 53.8 1.0 O C:HOH2033 4.9 20.5 1.0

V.A.Rao, S.M.Shepherd, G.English, S.J.Coulthurst, W.N.Hunter. The Structure of Serratia Marcescens Lip, A Membrane-Bound Component of the Type VI Secretion System Acta Crystallogr.,Sect.F V. 67 1065 2011.
ISSN: ISSN 1744-3091
PubMed: 22120744
DOI: 10.1107/S0907444911046300