Sodium in PDB 3zyv: Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)

All present enzymatic activity of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3):
1.2.3.1;

The structure of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3), PDB code: 3zyv was solved by J.Trincao, C.Coelho, M.Mahro, D.Rodrigues, M.Terao, E.Garattini, S.Leimkuehler, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.906 / 2.54
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	90.880, 135.270, 147.370, 78.16, 77.72, 89.90
R / Rfree (%)	25.55 / 28.5

The structure of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) also contains other interesting chemical elements:

Molybdenum	(Mo)	4 atoms
Iron	(Fe)	16 atoms

The binding sites of Sodium atom in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) (pdb code 3zyv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3), PDB code: 3zyv:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2337 b:26.4 occ:1.00 O A:THR875 2.3 39.4 1.0 OG A:SER879 2.4 48.1 1.0 O A:GLY872 2.7 39.5 1.0 O A:PRO876 2.7 41.4 1.0 O A:ASN913 3.0 40.1 1.0 C A:PRO876 3.3 42.1 1.0 OG A:SER912 3.4 35.6 1.0 C A:THR875 3.5 39.1 1.0 CB A:SER879 3.5 43.1 1.0 C A:GLY872 3.6 37.4 1.0 CB A:ASP877 3.6 37.2 1.0 N A:ASN913 3.9 24.2 1.0 CA A:PRO876 4.0 38.2 1.0 N A:ASP877 4.0 42.2 1.0 CA A:GLY872 4.1 35.5 1.0 C A:ASN913 4.1 38.0 1.0 N A:PRO876 4.2 37.0 1.0 NE2 A:HIS845 4.3 36.0 1.0 N A:SER879 4.3 41.1 1.0 CA A:ASP877 4.3 41.6 1.0 CA A:ASN913 4.4 19.6 1.0 CA A:SER879 4.4 47.1 1.0 C A:SER912 4.5 33.9 1.0 CB A:SER912 4.5 33.0 1.0 CA A:SER912 4.6 31.1 1.0 N A:THR875 4.7 36.3 1.0 CA A:THR875 4.7 35.4 1.0 N A:GLY873 4.7 37.4 1.0 OG1 A:THR875 4.7 39.9 1.0 CD1 A:ILE713 4.7 46.4 1.0 C A:ASP877 4.8 42.9 1.0 CB A:ASN913 4.8 24.1 1.0 CE1 A:HIS845 4.9 36.1 1.0 CG A:ASP877 4.9 41.6 1.0 N A:ASP878 4.9 41.0 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na2337 b:13.0 occ:1.00 O B:THR875 2.4 39.7 1.0 OG B:SER879 2.5 47.2 1.0 O B:GLY872 2.7 39.4 1.0 O B:PRO876 2.8 40.3 1.0 O B:ASN913 2.9 39.6 1.0 O B:HOH2124 2.9 40.8 1.0 OG B:SER912 3.2 36.8 1.0 C B:PRO876 3.4 41.1 1.0 CB B:ASP877 3.5 36.5 1.0 C B:THR875 3.6 39.6 1.0 C B:GLY872 3.7 37.9 1.0 CB B:SER879 3.7 42.6 1.0 N B:ASN913 3.8 25.5 1.0 C B:ASN913 3.9 36.7 1.0 N B:ASP877 4.0 41.8 1.0 CA B:PRO876 4.1 38.6 1.0 CA B:GLY872 4.2 35.6 1.0 CA B:ASN913 4.3 20.2 1.0 CA B:ASP877 4.3 40.9 1.0 NE2 B:HIS845 4.3 35.6 1.0 N B:PRO876 4.3 37.2 1.0 C B:SER912 4.3 33.9 1.0 N B:SER879 4.4 40.9 1.0 CB B:SER912 4.4 33.0 1.0 CA B:SER912 4.5 30.7 1.0 CA B:SER879 4.5 46.7 1.0 OG1 B:THR875 4.6 41.3 1.0 CB B:ASN913 4.7 25.1 1.0 CG B:ASP877 4.7 40.8 1.0 N B:THR875 4.7 36.0 1.0 CA B:THR875 4.7 34.5 1.0 N B:GLY873 4.8 38.1 1.0 C B:ASP877 4.8 42.5 1.0 N B:ASP878 4.8 41.4 1.0 CE1 B:HIS845 4.9 36.4 1.0 CD1 B:ILE713 4.9 46.3 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) within 5.0Å range: probe atom residue distance (Å) B Occ C:Na2337 b:50.8 occ:1.00 O C:THR875 2.3 41.6 1.0 O C:GLY872 2.5 42.0 1.0 OG C:SER912 2.6 38.0 1.0 O C:ASN913 2.7 42.0 1.0 OG C:SER879 3.2 47.6 1.0 N C:ASN913 3.3 38.4 1.0 O C:PRO876 3.4 41.8 1.0 C C:THR875 3.5 41.5 1.0 CB C:ASP877 3.6 37.9 1.0 C C:GLY872 3.6 43.4 1.0 C C:ASN913 3.7 39.5 1.0 CB C:SER912 3.7 37.3 1.0 C C:SER912 3.7 37.3 1.0 C C:PRO876 3.7 42.4 1.0 CA C:SER912 3.8 37.8 1.0 CA C:ASN913 3.9 38.1 1.0 N C:ASP877 4.2 42.1 1.0 OG1 C:THR875 4.2 40.8 1.0 CA C:GLY872 4.3 44.6 1.0 CB C:SER879 4.4 44.2 1.0 N C:THR875 4.4 41.6 1.0 N C:PRO876 4.4 42.0 1.0 CA C:PRO876 4.4 42.6 1.0 CA C:ASP877 4.5 40.9 1.0 CA C:THR875 4.5 41.3 1.0 CB C:ASN913 4.5 39.5 1.0 O C:SER912 4.5 39.1 1.0 N C:GLY873 4.6 44.0 1.0 NE2 C:HIS845 4.6 42.1 1.0 CG C:ASP877 4.7 42.1 1.0 CA C:GLY873 4.7 43.0 1.0 O C:HOH2087 4.8 31.9 1.0 N C:THR914 4.9 42.8 1.0 C C:GLY873 5.0 43.8 1.0 N C:SER879 5.0 42.2 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) within 5.0Å range: probe atom residue distance (Å) B Occ D:Na2337 b:17.8 occ:1.00 O D:THR875 2.4 44.1 1.0 O D:GLY872 2.5 44.9 1.0 O D:ASN913 2.6 42.2 1.0 OG D:SER912 2.7 41.4 1.0 OG D:SER879 3.1 49.5 1.0 N D:ASN913 3.3 42.1 1.0 O D:PRO876 3.3 44.6 1.0 CB D:ASP877 3.5 41.6 1.0 C D:ASN913 3.6 41.9 1.0 C D:GLY872 3.6 46.1 1.0 C D:THR875 3.6 44.0 1.0 C D:PRO876 3.7 44.1 1.0 C D:SER912 3.8 41.1 1.0 CB D:SER912 3.8 40.8 1.0 CA D:ASN913 3.9 42.1 1.0 CA D:SER912 3.9 41.3 1.0 N D:ASP877 4.2 42.9 1.0 CB D:SER879 4.3 46.9 1.0 CA D:GLY872 4.3 47.3 1.0 OG1 D:THR875 4.3 41.4 1.0 CA D:ASP877 4.4 42.1 1.0 CA D:PRO876 4.4 45.0 1.0 CB D:ASN913 4.4 43.4 1.0 N D:PRO876 4.5 44.4 1.0 NE2 D:HIS845 4.5 45.7 1.0 N D:THR875 4.5 43.9 1.0 CA D:THR875 4.6 43.6 1.0 N D:GLY873 4.6 46.4 1.0 O D:SER912 4.6 40.0 1.0 CG D:ASP877 4.7 41.6 1.0 CA D:GLY873 4.8 45.5 1.0 N D:SER879 4.8 45.2 1.0 N D:THR914 4.8 43.0 1.0 CE1 D:HIS845 5.0 44.7 1.0

C.Coelho, M.Mahro, J.Trincao, A.T.P.Carvalho, M.J.Ramos, M.Terao, E.Garattini, S.Leimkuhler, M.J.Romao. The First Mammalian Aldehyde Oxidase Crystal Structure: Insights Into Substrate Specificity. J.Biol.Chem. V. 287 40690 2012.
ISSN: ISSN 0021-9258
PubMed: 23019336
DOI: 10.1074/JBC.M112.390419