Sodium in PDB 3zuy: Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt.

The structure of Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt., PDB code: 3zuy was solved by N.-J.Hu, S.Iwata, A.D.Cameron, D.Drew, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.42 / 2.20
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	73.350, 73.350, 162.450, 90.00, 90.00, 90.00
R / Rfree (%)	21.16 / 24.47

The binding sites of Sodium atom in the Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt. (pdb code 3zuy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt., PDB code: 3zuy:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1310 b:47.0 occ:1.00 OE1 A:GLU260 2.2 52.2 1.0 O A:SER128 2.2 48.3 1.0 OD1 A:ASN115 2.3 50.3 1.0 OG A:SER128 2.3 54.1 1.0 OG1 A:THR132 2.4 43.3 1.0 OG A:SER114 2.5 51.2 1.0 C A:SER128 2.8 50.2 1.0 CD A:GLU260 3.1 63.2 1.0 CA A:SER128 3.3 47.1 1.0 CB A:SER128 3.3 49.0 1.0 OE2 A:GLU260 3.3 51.1 1.0 CB A:THR132 3.5 48.2 1.0 CG A:ASN115 3.5 56.1 1.0 CB A:SER114 3.6 48.6 1.0 N A:ASN115 3.7 50.5 1.0 N A:VAL129 3.8 50.0 1.0 O A:HOH2014 3.8 54.1 1.0 C A:SER114 4.0 54.1 1.0 N A:THR132 4.1 44.7 1.0 CA A:ASN115 4.2 52.0 1.0 CA A:THR132 4.3 43.8 1.0 CA A:VAL129 4.4 49.7 1.0 CA A:SER114 4.4 48.2 1.0 CB A:ASN115 4.4 48.1 1.0 O A:GLY111 4.5 49.3 1.0 ND2 A:ASN115 4.5 42.9 1.0 O A:SER114 4.5 55.0 1.0 CG2 A:THR132 4.5 47.1 1.0 CG A:GLU260 4.5 43.1 1.0 O A:HOH2013 4.7 38.1 1.0 N A:SER128 4.7 49.1 1.0 C A:VAL129 5.0 53.9 1.0 N A:SER114 5.0 47.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1311 b:41.0 occ:1.00 O A:MET263 2.2 41.3 1.0 OE1 A:GLN77 2.3 39.3 1.0 OE1 A:GLN264 2.3 38.8 1.0 O A:VAL261 2.3 46.1 1.0 O A:GLU260 2.4 38.2 1.0 C A:VAL261 3.1 46.6 1.0 CD A:GLN77 3.1 49.1 1.0 C A:MET263 3.2 44.2 1.0 NE2 A:GLN77 3.3 36.1 1.0 C A:GLU260 3.4 41.5 1.0 CA A:VAL261 3.5 40.4 1.0 CD A:GLN264 3.5 50.6 1.0 CA A:GLY110 3.7 38.3 1.0 O A:HOH2013 3.9 38.1 1.0 N A:VAL261 3.9 40.6 1.0 N A:MET263 3.9 43.5 1.0 N A:GLN264 4.1 40.5 1.0 CA A:MET263 4.1 42.0 1.0 N A:GLY262 4.2 44.5 1.0 CG A:GLN264 4.2 42.2 1.0 CA A:GLN264 4.2 40.2 1.0 N A:GLY110 4.3 38.4 1.0 CG A:MET81 4.3 41.1 1.0 C A:GLY262 4.3 45.6 1.0 NE2 A:GLN264 4.5 34.8 1.0 CG A:GLN77 4.5 40.0 1.0 O A:HOH2008 4.6 42.9 1.0 CA A:GLU260 4.7 38.7 1.0 CA A:GLY262 4.8 43.6 1.0 CB A:GLN264 4.8 41.1 1.0 C A:PRO109 4.8 40.2 1.0 O A:PRO109 4.9 37.2 1.0 C A:GLY110 4.9 43.7 1.0 CB A:VAL261 4.9 45.0 1.0 O A:GLY262 4.9 42.1 1.0 N A:GLY111 4.9 42.8 1.0 CB A:GLN77 4.9 41.0 1.0

N.-J.Hu, S.Iwata, A.D.Cameron, D.Drew. Crystal Structure of A Bacterial Homologue of the Bile Acid Sodium Symporter Asbt. Nature V. 478 408 2011.
ISSN: ISSN 0028-0836
PubMed: 21976025
DOI: 10.1038/NATURE10450