Sodium in PDB 3zpi: Pikc D50N Mutant in P21 Space Group

The structure of Pikc D50N Mutant in P21 Space Group, PDB code: 3zpi was solved by L.M.Podust, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	90.80 / 1.63
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	76.085, 59.784, 91.267, 90.00, 95.81, 90.00
R / Rfree (%)	17.39 / 21.874

The structure of Pikc D50N Mutant in P21 Space Group also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Sodium atom in the Pikc D50N Mutant in P21 Space Group (pdb code 3zpi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Pikc D50N Mutant in P21 Space Group, PDB code: 3zpi:

Sodium binding site 1 out of 1 in the Pikc D50N Mutant in P21 Space Group


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Pikc D50N Mutant in P21 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1418 b:15.2 occ:1.00 O A:TYR390 2.3 16.7 1.0 O A:ASN392 2.3 19.0 1.0 O A:HOH2401 2.4 21.9 1.0 O A:ILE395 2.4 12.2 1.0 OE1 A:GLU291 2.8 25.0 1.0 O A:HOH2033 3.0 18.4 1.0 O A:HOH2458 3.2 15.2 1.0 C A:ASN392 3.4 19.1 1.0 C A:TYR390 3.5 17.3 1.0 CD A:GLU291 3.6 16.9 1.0 C A:ILE395 3.6 13.3 1.0 O A:PRO391 3.6 19.6 1.0 C A:PRO391 3.6 20.5 1.0 OE2 A:GLU291 3.7 14.8 1.0 N A:ASN392 3.9 19.1 1.0 CA A:PRO391 4.1 19.1 1.0 CA A:PRO393 4.2 17.8 1.0 N A:PRO393 4.2 18.5 1.0 N A:PRO391 4.2 19.2 1.0 N A:ILE395 4.2 13.3 1.0 CA A:ASN392 4.3 20.2 1.0 N A:ARG396 4.3 12.1 1.0 CA A:ARG396 4.4 12.3 1.0 CB A:TYR390 4.4 17.7 1.0 CA A:ILE395 4.5 14.1 1.0 CA A:TYR390 4.5 17.5 1.0 C A:PRO393 4.6 15.6 1.0 CB A:GLU291 4.8 11.3 1.0 CG A:GLU291 4.8 13.9 1.0 O A:ALA25 4.8 14.9 1.0 CB A:ASN392 4.9 19.6 1.0 N A:MET394 5.0 17.0 1.0

L.M.Podust, L.M.Podust. N/A N/A.