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Sodium in PDB 3w1v: Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with Inihibitor

Enzymatic activity of Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with Inihibitor

All present enzymatic activity of Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with Inihibitor:
4.2.1.115;

Protein crystallography data

The structure of Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with Inihibitor, PDB code: 3w1v was solved by T.Miyafusa, J.M.Caaveiro, Y.Tanaka, K.Tsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.80 / 2.10
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 123.780, 123.780, 104.460, 90.00, 90.00, 120.00
R / Rfree (%) 16.4 / 20.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with Inihibitor (pdb code 3w1v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with Inihibitor, PDB code: 3w1v:

Sodium binding site 1 out of 1 in 3w1v

Go back to Sodium Binding Sites List in 3w1v
Sodium binding site 1 out of 1 in the Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with Inihibitor


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with Inihibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na408

b:22.2
occ:1.00
 O A:HOH511 2.8 15.2 1.0
NZ B:LYS148 2.8 27.4 1.0
O A:HOH646 3.0 32.3 1.0
O B:HOH628 3.1 22.2 1.0
CG2 A:VAL94 3.6 12.5 1.0
CD A:PRO93 3.6 11.2 1.0
CB B:ALA147 3.7 14.5 1.0
CG A:PRO93 3.9 11.2 1.0
N A:VAL94 4.0 11.2 1.0
CB A:VAL94 4.0 12.6 1.0
CE B:LYS148 4.1 31.5 1.0
N A:PRO93 4.1 11.1 1.0
O B:HOH629 4.2 30.5 1.0
CA A:PHE92 4.6 12.0 1.0
CD B:LYS148 4.6 34.9 1.0
C A:PHE92 4.6 11.6 1.0
O A:PHE91 4.6 12.2 1.0
O B:VAL144 4.6 12.4 1.0
CA A:VAL94 4.7 11.2 1.0
OE2 B:GLU105 4.9 17.7 1.0
C A:PRO93 4.9 10.7 1.0
O A:HOH510 5.0 19.2 1.0
CA A:PRO93 5.0 11.0 1.0
OE1 B:GLU105 5.0 18.2 1.0
CA B:ALA147 5.0 16.8 1.0
C B:ALA147 5.0 18.5 1.0

Reference:

T.Miyafusa, J.M.Caaveiro, Y.Tanaka, M.E.Tanner, K.Tsumoto. Crystal Structure of the Capsular Polysaccharide Synthesizing Protein Cape of Staphylococcus Aureus. Biosci.Rep. V. 33 463 2013.
ISSN: ISSN 0144-8463
PubMed: 23611437
DOI: 10.1042/BSR20130017
Page generated: Mon Oct 7 13:53:03 2024

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