Sodium in the structure of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With Gluconolactone (pdb 3vif)

The binding sites of Sodium atom in the structure of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With Gluconolactone (pdb code 3vif). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3vif structure was solved by W.Y.JENG, C.I.LIU, A.H.J.WANG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 28.2-1.0 Space group C121 a (A) 92.950 b (A) 68.479 c (A) 74.846 alpha (°) 90.00 beta (°) 95.33 gamma (°) 90.00 Rfactor (%) 12.2 Rfree (%) 14.2 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3vif Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3vif. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Val120, A: Val176, A: Lys179, A: Asn180, A: Hoh791, A: Hoh951, A: Hoh1059, conact list: Atom Atom Distance (A) Na CB A:Val120 4.53 Na CG2 A:Val120 4.03 Na CG1 A:Val120 4.21 Na CB A:Val176 4.81 Na CG2 A:Val176 4.62 Na CG1 A:Val176 4.16 Na CA A:Val176 4.95 Na CE A:Lys179 3.82 Na CD A:Lys179 3.88 Na CG A:Lys179 4.93 Na NZ A:Lys179 3.26 Na ND2 A:Asn180 3.24 Na OD1 A:Asn180 4.33 Na CG A:Asn180 4.21 Na O A:Hoh791 4.98 Na O A:Hoh951 2.86 Na O A:Hoh1059 3.31 interactive model: