Sodium in PDB 3v6n: Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination

The structure of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination, PDB code: 3v6n was solved by U.Sharma, C.G.Suresh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.94 / 2.20
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.246, 73.360, 87.174, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 22.6

The structure of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination also contains other interesting chemical elements:

Iodine	(I)	2 atoms
Calcium	(Ca)	2 atoms
Chlorine	(Cl)	3 atoms

The binding sites of Sodium atom in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination (pdb code 3v6n). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination, PDB code: 3v6n:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination within 5.0Å range: probe atom residue distance (Å) B Occ A:Na232 b:12.0 occ:1.00 O A:ALA176 2.2 12.5 1.0 O A:ALA9 2.2 11.8 1.0 O A:SER67 2.2 12.7 1.0 O A:ALA123 2.3 11.9 1.0 CL A:CL231 2.7 10.5 1.0 C A:ALA176 3.4 12.9 1.0 C A:ALA9 3.4 12.1 1.0 C A:SER67 3.4 12.7 1.0 C A:ALA123 3.5 12.3 1.0 N A:ALA9 4.0 12.4 1.0 N A:ALA123 4.0 12.4 1.0 N A:SER67 4.2 12.3 1.0 CA A:ALA9 4.2 12.3 1.0 CA A:ALA123 4.2 12.2 1.0 N A:ALA176 4.2 14.3 1.0 CA A:ALA176 4.3 13.5 1.0 N A:PHE177 4.3 12.2 1.0 N A:PHE68 4.3 12.6 1.0 I A:IOD228 4.3 16.5 1.0 CA A:SER67 4.3 12.7 1.0 CA A:PHE177 4.4 12.3 1.0 N A:PHE10 4.4 11.9 1.0 CA A:PHE68 4.4 12.8 1.0 N A:PHE124 4.5 12.4 1.0 CA A:PHE10 4.5 11.9 1.0 CB A:ALA123 4.5 11.9 1.0 CA A:PHE124 4.6 13.0 1.0 CB A:PHE177 4.6 12.0 1.0 CB A:ALA9 4.6 12.2 1.0 OG A:SER67 4.6 15.0 1.0 CB A:ALA176 4.7 13.5 1.0 CB A:PHE68 4.7 12.3 1.0 CB A:PHE10 4.8 11.9 1.0 CB A:PHE124 4.9 12.7 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination within 5.0Å range: probe atom residue distance (Å) B Occ B:Na231 b:14.8 occ:1.00 O B:SER67 2.2 14.6 1.0 O B:ALA123 2.3 15.8 1.0 O B:ALA9 2.3 15.7 1.0 O B:ALA176 2.4 16.5 1.0 CL B:CL230 2.6 14.5 1.0 C B:SER67 3.4 15.6 1.0 C B:ALA123 3.4 16.5 1.0 C B:ALA9 3.5 16.8 1.0 C B:ALA176 3.5 17.1 1.0 N B:ALA123 3.9 16.2 1.0 N B:ALA9 4.0 17.5 1.0 CA B:ALA123 4.1 16.0 1.0 N B:SER67 4.1 15.6 1.0 N B:ALA176 4.2 18.8 1.0 CA B:SER67 4.2 16.0 1.0 CA B:ALA9 4.3 16.8 1.0 N B:PHE68 4.3 15.5 1.0 CA B:PHE68 4.3 16.1 1.0 CA B:ALA176 4.3 17.7 1.0 I B:IOD228 4.4 20.6 1.0 N B:PHE177 4.4 17.0 1.0 CA B:PHE177 4.4 17.2 1.0 N B:PHE124 4.4 16.6 1.0 N B:PHE10 4.4 16.8 1.0 CB B:ALA123 4.5 15.6 1.0 OG B:SER67 4.5 19.2 1.0 CA B:PHE124 4.6 17.3 1.0 CA B:PHE10 4.6 17.0 1.0 CB B:PHE68 4.6 15.2 1.0 CB B:PHE177 4.7 17.1 1.0 CB B:ALA9 4.7 16.6 1.0 CB B:ALA176 4.7 17.5 1.0 CB B:PHE10 4.8 16.6 1.0 CB B:PHE124 5.0 17.2 1.0

U.Sharma, U.V.Katre, C.G.Suresh. Crystal Structure of A Plant Albumin From Cicer Arietinum (Chickpea) Possessing Hemopexin Fold and Hemagglutination Activity Planta 2015.
ISSN: ISSN 0032-0935
PubMed: 25559942
DOI: 10.1007/S00425-014-2236-6