Sodium in PDB 3v6k: Replication of N2,3-Ethenoguanine By Dna Polymerases

All present enzymatic activity of Replication of N2,3-Ethenoguanine By Dna Polymerases:
2.7.7.7;

The structure of Replication of N2,3-Ethenoguanine By Dna Polymerases, PDB code: 3v6k was solved by L.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.90 / 3.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.855, 110.953, 100.238, 90.00, 102.70, 90.00
R / Rfree (%)	22.9 / 30.3

The structure of Replication of N2,3-Ethenoguanine By Dna Polymerases also contains other interesting chemical elements:

Fluorine	(F)	2 atoms
Magnesium	(Mg)	4 atoms
Calcium	(Ca)	7 atoms

The binding sites of Sodium atom in the Replication of N2,3-Ethenoguanine By Dna Polymerases (pdb code 3v6k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Replication of N2,3-Ethenoguanine By Dna Polymerases, PDB code: 3v6k:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Replication of N2,3-Ethenoguanine By Dna Polymerases


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Replication of N2,3-Ethenoguanine By Dna Polymerases within 5.0Å range:

Sodium binding site 2 out of 4 in the Replication of N2,3-Ethenoguanine By Dna Polymerases


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Replication of N2,3-Ethenoguanine By Dna Polymerases within 5.0Å range:

Sodium binding site 3 out of 4 in the Replication of N2,3-Ethenoguanine By Dna Polymerases


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Replication of N2,3-Ethenoguanine By Dna Polymerases within 5.0Å range: probe atom residue distance (Å) B Occ P:Na101 b:0.0 occ:1.00 N7 P:DG5 3.0 1.0 0.8 O6 P:DG5 3.5 0.7 0.8 C5 P:DG5 3.6 0.1 0.8 C6 P:DG5 3.9 0.1 0.8 C8 P:DG5 3.9 0.8 0.8 N4 B:DC14 4.2 0.1 1.0 N3 B:DC14 4.3 0.2 1.0 C4 B:DC14 4.8 0.1 1.0 C4 P:DG5 4.8 0.8 0.8 N9 P:DG5 4.9 0.6 0.8 O P:HOH201 4.9 90.6 1.0

Sodium binding site 4 out of 4 in the Replication of N2,3-Ethenoguanine By Dna Polymerases


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Replication of N2,3-Ethenoguanine By Dna Polymerases within 5.0Å range: probe atom residue distance (Å) B Occ B:Na101 b:0.3 occ:1.00 O2 B:DC14 3.9 0.8 1.0 C1' B:DC14 4.6 0.4 1.0 O3' B:DC14 4.7 0.0 1.0 C2 B:DC14 5.0 0.9 1.0

L.Zhao, P.P.Christov, I.D.Kozekov, M.G.Pence, P.S.Pallan, C.J.Rizzo, M.Egli, F.P.Guengerich. Replication of N(2) ,3-Ethenoguanine By Dna Polymerases. Angew.Chem.Int.Ed.Engl. V. 51 5466 2012.
ISSN: ISSN 1433-7851
PubMed: 22488769
DOI: 10.1002/ANIE.201109004