Sodium in PDB 3v3r: Crystal Structure of Ges-11

All present enzymatic activity of Crystal Structure of Ges-11:
3.5.2.6;

The structure of Crystal Structure of Ges-11, PDB code: 3v3r was solved by H.Delbruck, K.M.V.Hoffmann, C.Bebrone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	70.680, 85.240, 85.120, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 23.2

The structure of Crystal Structure of Ges-11 also contains other interesting chemical elements:

Iodine

(I)

25 atoms

The binding sites of Sodium atom in the Crystal Structure of Ges-11 (pdb code 3v3r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Ges-11, PDB code: 3v3r:

Sodium binding site 1 out of 1 in the Crystal Structure of Ges-11


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ges-11 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na300 b:16.8 occ:1.00 I B:IOD290 2.1 17.3 0.8 I B:IOD291 2.6 21.2 0.8 N B:MET56 3.1 23.1 1.0 CA B:ARG55 3.6 20.3 1.0 N B:ARG55 3.6 19.6 1.0 C B:ARG55 3.7 20.5 1.0 O B:HOH311 3.9 17.5 1.0 CB B:MET56 4.0 25.3 1.0 CA B:MET56 4.1 23.2 1.0 N B:ALA57 4.2 22.1 1.0 C B:HIS54 4.4 19.1 1.0 CG B:MET56 4.5 26.7 1.0 C B:MET56 4.7 22.2 1.0 O B:ARG55 4.8 20.5 1.0 CA B:HIS54 4.9 18.9 1.0 CE B:MET56 4.9 30.0 1.0

H.Delbruck, P.Bogaerts, M.B.Kupper, R.Rezende De Castro, S.Bennink, Y.Glupczynski, M.Galleni, K.M.Hoffmann, C.Bebrone. Kinetic and Crystallographic Studies of Extended-Spectrum Ges-11, Ges-12, and Ges-14 Beta-Lactamases. Antimicrob.Agents Chemother. V. 56 5618 2012.
ISSN: ISSN 0066-4804
PubMed: 22908160
DOI: 10.1128/AAC.01272-12