Sodium in PDB 3v3c: Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum

The structure of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum, PDB code: 3v3c was solved by S.Saroussi, N.Nelson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.89 / 3.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	139.130, 102.380, 122.430, 90.00, 101.22, 90.00
R / Rfree (%)	29.9 / 32.2

The structure of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum also contains other interesting chemical elements:

Yttrium

(Y)

10 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Sodium atom in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum (pdb code 3v3c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 14 binding sites of Sodium where determined in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum, PDB code: 3v3c:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ A:Na114 b:36.3 occ:1.00 OE1 A:GLU37 3.3 0.9 1.0 OE2 B:GLU37 3.5 0.5 1.0 OE2 A:GLU37 3.8 0.3 1.0 CD A:GLU37 3.9 0.8 1.0 CD B:GLU37 3.9 0.2 1.0 OE1 B:GLU37 4.0 0.0 1.0 NA B:NA126 4.6 33.4 1.0 NA A:NA115 4.6 40.5 1.0

Sodium binding site 2 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ A:Na115 b:40.5 occ:1.00 OE1 N:GLU37 3.4 0.2 1.0 OE2 A:GLU37 3.5 0.3 1.0 OE2 N:GLU37 3.7 0.8 1.0 CD A:GLU37 3.9 0.8 1.0 CD N:GLU37 3.9 0.6 1.0 OE1 A:GLU37 4.0 0.9 1.0 NA A:NA114 4.6 36.3 1.0 CG A:GLU37 5.0 0.9 1.0

Sodium binding site 3 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ L:Na116 b:26.4 occ:1.00 OE1 L:GLU37 3.4 0.8 1.0 OE2 M:GLU37 3.5 0.8 1.0 OE1 M:GLU37 3.7 0.5 1.0 CD M:GLU37 3.8 0.5 1.0 OE2 L:GLU37 4.1 0.9 1.0 CD L:GLU37 4.1 0.7 1.0 NA K:NA117 4.5 39.5 1.0 NA M:NA127 4.7 39.4 1.0 CG M:GLU37 4.9 0.5 1.0

Sodium binding site 4 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ K:Na117 b:39.5 occ:1.00 OE1 K:GLU37 3.4 0.9 1.0 OE2 L:GLU37 3.5 0.9 1.0 OE1 L:GLU37 3.6 0.8 1.0 CD L:GLU37 3.7 0.7 1.0 CD K:GLU37 4.2 0.3 1.0 OE2 K:GLU37 4.2 0.7 1.0 NA L:NA116 4.5 26.4 1.0 CG L:GLU37 4.8 0.2 1.0

Sodium binding site 5 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ J:Na118 b:50.0 occ:1.00 OE1 J:GLU37 3.4 0.9 1.0 OE2 J:GLU37 4.2 0.9 1.0 CD J:GLU37 4.2 0.2 1.0 NA I:NA119 4.5 46.2 1.0 OE2 K:GLU37 4.6 0.7 1.0 OE1 K:GLU37 4.6 0.9 1.0 CD K:GLU37 4.8 0.3 1.0

Sodium binding site 6 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ I:Na119 b:46.2 occ:1.00 OE1 I:GLU37 3.3 0.0 1.0 OE2 I:GLU37 3.7 0.1 1.0 CD I:GLU37 3.9 0.4 1.0 OE2 J:GLU37 3.9 0.9 1.0 CD J:GLU37 4.4 0.2 1.0 OE1 J:GLU37 4.5 0.9 1.0 NA J:NA118 4.5 50.0 1.0

Sodium binding site 7 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ H:Na120 b:89.6 occ:1.00 OE1 H:GLU37 2.7 0.5 1.0 OE2 H:GLU37 3.0 0.2 1.0 CD H:GLU37 3.1 0.9 1.0 OE2 I:GLU37 3.4 0.1 1.0 CD I:GLU37 3.8 0.4 1.0 OE1 I:GLU37 4.1 0.0 1.0 CG H:GLU37 4.5 0.8 1.0 CG H:GLN34 4.5 31.0 1.0 CG I:GLU37 4.6 0.5 1.0

Sodium binding site 8 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ G:Na121 b:25.1 occ:1.00 OE1 G:GLU37 3.3 0.7 1.0 OE2 G:GLU37 3.4 0.6 1.0 CD G:GLU37 3.8 0.3 1.0 OE2 H:GLU37 4.1 0.2 1.0 NA F:NA122 4.4 7.0 1.0 CD H:GLU37 4.7 0.9 1.0 OE1 H:GLU37 4.8 0.5 1.0

Sodium binding site 9 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ F:Na122 b:7.0 occ:1.00 OE1 F:GLU37 3.3 0.3 1.0 OE2 F:GLU37 3.4 0.6 1.0 OE2 G:GLU37 3.7 0.6 1.0 CD F:GLU37 3.7 0.2 1.0 CD G:GLU37 4.3 0.3 1.0 NA G:NA121 4.4 25.1 1.0 NA E:NA123 4.4 18.4 1.0 OE1 G:GLU37 4.5 0.7 1.0 CG F:GLN34 4.9 42.1 1.0

Sodium binding site 10 out of 14 in the Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of Crystal Structure of Chloroplast Atp Synthase C-Ring From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ E:Na123 b:18.4 occ:1.00 OE1 E:GLU37 3.6 1.0 1.0 OE2 F:GLU37 3.6 0.6 1.0 OE2 E:GLU37 3.7 0.7 1.0 CD E:GLU37 4.0 0.1 1.0 CD F:GLU37 4.2 0.2 1.0 NA E:NA124 4.3 33.7 1.0 OE1 F:GLU37 4.3 0.3 1.0 NA F:NA122 4.4 7.0 1.0 CG E:GLN34 4.9 13.9 1.0

S.Saroussi, M.Schushan, N.Ben-Tal, W.Junge, N.Nelson. Structure and Flexibility of the C-Ring in the Electromotor of Rotary F(O)F(1)-Atpase of Pea Chloroplasts. Plos One V. 7 43045 2012.
ISSN: ESSN 1932-6203
PubMed: 23049735
DOI: 10.1371/JOURNAL.PONE.0043045