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Sodium in PDB 3uww: Crystal Structure of Staphylococcus Aureus Triosephosphate Isomerase Complexed with 3-Phosphoglyceric Acid

Enzymatic activity of Crystal Structure of Staphylococcus Aureus Triosephosphate Isomerase Complexed with 3-Phosphoglyceric Acid

All present enzymatic activity of Crystal Structure of Staphylococcus Aureus Triosephosphate Isomerase Complexed with 3-Phosphoglyceric Acid:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Staphylococcus Aureus Triosephosphate Isomerase Complexed with 3-Phosphoglyceric Acid, PDB code: 3uww was solved by S.Mukherjee, A.Roychowdhury, D.Dutta, A.K.Das, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.56 / 2.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.583, 80.583, 174.042, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 24.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Staphylococcus Aureus Triosephosphate Isomerase Complexed with 3-Phosphoglyceric Acid (pdb code 3uww). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Staphylococcus Aureus Triosephosphate Isomerase Complexed with 3-Phosphoglyceric Acid, PDB code: 3uww:

Sodium binding site 1 out of 1 in 3uww

Go back to Sodium Binding Sites List in 3uww
Sodium binding site 1 out of 1 in the Crystal Structure of Staphylococcus Aureus Triosephosphate Isomerase Complexed with 3-Phosphoglyceric Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Staphylococcus Aureus Triosephosphate Isomerase Complexed with 3-Phosphoglyceric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na254

b:10.2
occ:1.00
 OG1 B:THR80 2.3 20.6 1.0
CB B:THR80 3.2 21.4 1.0
N A:ILE44 3.3 22.6 1.0
O A:HOH288 3.4 16.9 1.0
N A:ALA43 3.5 22.0 1.0
CA B:THR80 3.5 21.4 1.0
CG2 B:THR80 3.6 18.9 1.0
CB A:ILE44 3.7 23.3 1.0
CB A:PRO42 3.7 22.6 1.0
O B:HOH286 3.8 14.6 1.0
CG2 A:ILE44 3.9 22.9 1.0
CB B:ALA43 3.9 20.6 1.0
C A:PRO42 4.0 22.5 1.0
CA A:ALA43 4.1 22.2 1.0
O B:GLU79 4.1 21.3 1.0
O B:HOH256 4.1 16.3 1.0
CB A:ALA43 4.1 21.8 1.0
CA A:ILE44 4.1 22.8 1.0
N B:THR80 4.2 21.1 1.0
C A:ALA43 4.2 22.6 1.0
CA A:PRO42 4.2 22.5 1.0
C B:GLU79 4.4 20.9 1.0
O B:HOH261 4.6 16.1 1.0
C B:THR80 4.7 22.1 1.0
O A:PRO42 4.8 22.9 1.0
N B:SER81 4.9 22.4 1.0
CG1 A:ILE44 5.0 24.1 1.0

Reference:

S.Mukherjee, A.Roychowdhury, D.Dutta, A.K.Das. Crystal Structures of Triosephosphate Isomerase From Methicillin Resistant Staphylococcus Aureus MRSA252 Provide Structural Insights Into Novel Modes of Ligand Binding and Unique Conformations of Catalytic Loop Biochimie V. 94 2532 2012.
ISSN: ISSN 0300-9084
PubMed: 22813930
DOI: 10.1016/J.BIOCHI.2012.07.001
Page generated: Tue Dec 15 06:28:01 2020

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