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Sodium in PDB 3uss: Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa

Enzymatic activity of Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa

All present enzymatic activity of Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa:
1.13.11.20;

Protein crystallography data

The structure of Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa, PDB code: 3uss was solved by S.M.Wilbanks, E.P.Tchesnokov, G.N.L.Jameson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.30 / 2.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.330, 86.790, 123.000, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 27.7

Other elements in 3uss:

The structure of Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa (pdb code 3uss). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa, PDB code: 3uss:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in 3uss

Go back to Sodium Binding Sites List in 3uss
Sodium binding site 1 out of 4 in the Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na217

b:47.3
occ:1.00
 O A:HOH226 2.7 32.5 1.0
O A:HOH233 2.8 28.5 1.0
O A:ARG9 3.1 33.7 1.0
CB A:ARG9 3.8 35.2 1.0
C A:ARG9 3.8 34.0 1.0
CA A:ARG9 3.8 35.2 1.0
CA A:LEU41 3.9 34.3 1.0
N A:LEU41 4.0 34.6 1.0
CG A:GLU40 4.1 43.8 1.0
OE1 A:GLN12 4.1 51.4 1.0
CB A:LEU41 4.2 33.2 1.0
CD1 A:LEU41 4.2 25.5 1.0
C A:GLU40 4.3 35.6 1.0
O A:GLU40 4.4 35.0 1.0
CB A:GLU40 4.4 37.8 1.0
N A:PHE13 4.4 32.4 1.0
CB A:PHE13 4.5 31.1 1.0
CB A:GLN12 4.7 35.2 1.0
CG A:GLN12 4.7 42.5 1.0
O A:LEU37 4.7 34.0 1.0
CD A:GLN12 4.7 51.0 1.0
CA A:PHE13 4.8 31.3 1.0
CG A:LEU41 4.9 30.9 1.0
CG A:ARG9 4.9 38.0 1.0
NE A:ARG9 5.0 43.5 1.0

Sodium binding site 2 out of 4 in 3uss

Go back to Sodium Binding Sites List in 3uss
Sodium binding site 2 out of 4 in the Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na218

b:63.3
occ:1.00
 CD B:ARG188 3.5 44.8 1.0
CB A:ASP51 3.7 41.8 1.0
OD2 A:ASP51 3.9 51.4 1.0
N A:PRO190 4.0 28.8 1.0
SG A:CYS52 4.1 34.8 1.0
O A:ARG188 4.1 30.8 1.0
CG B:ARG188 4.1 36.6 1.0
CA A:PRO190 4.1 27.9 1.0
CB A:PRO190 4.2 26.9 1.0
CD A:PRO190 4.3 28.4 1.0
CG A:ASP51 4.3 47.2 1.0
C A:LEU189 4.4 29.8 1.0
NE B:ARG188 4.7 52.9 1.0
O A:LEU189 4.7 30.4 1.0
CG A:PRO190 4.7 27.4 1.0
C A:ARG188 4.9 31.1 1.0
CA A:ASP51 5.0 40.7 1.0

Sodium binding site 3 out of 4 in 3uss

Go back to Sodium Binding Sites List in 3uss
Sodium binding site 3 out of 4 in the Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na219

b:55.1
occ:1.00
 O A:LEU48 2.8 39.3 1.0
NH2 A:ARG101 3.7 36.3 1.0
C A:LEU48 3.8 37.7 1.0
N A:LEU48 3.9 36.9 1.0
CA A:LEU48 4.2 36.7 1.0
CB A:LEU48 4.2 35.9 1.0
CD2 A:LEU5 4.3 45.5 1.0
OD1 A:ASP45 4.5 41.6 1.0
N A:TRP47 4.7 38.5 1.0
O A:ASP45 4.8 39.9 1.0
C A:TRP47 4.8 37.1 1.0
CZ A:ARG101 4.9 34.2 1.0

Sodium binding site 4 out of 4 in 3uss

Go back to Sodium Binding Sites List in 3uss
Sodium binding site 4 out of 4 in the Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Cysteine Dioxygenase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na220

b:51.9
occ:1.00
 OG A:SER120 3.3 46.9 1.0
CB A:SER120 4.0 44.0 1.0
O A:SER120 4.4 45.2 1.0
CB A:PRO108 4.7 30.3 1.0

Reference:

G.N.L.Jameson, E.P.Tchesnokov, E.Siakkou, S.M.Wilbanks. Crystal Structure, Kinetics and M Ssbauer Spectroscopic Studies of A Bacterial Cysteine Dioxygenase To Be Published.
Page generated: Mon Oct 7 13:32:41 2024

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