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Sodium in PDB 3uq0: Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus.

Enzymatic activity of Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus.

All present enzymatic activity of Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus.:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus., PDB code: 3uq0 was solved by R.A.Gosavi, A.F.Moon, T.A.Kunkel, L.C.Pedersen, K.Bebenek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.92 / 2.14
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.843, 64.241, 139.290, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 23.9

Other elements in 3uq0:

The structure of Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus. also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus. (pdb code 3uq0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus., PDB code: 3uq0:

Sodium binding site 1 out of 1 in 3uq0

Go back to Sodium Binding Sites List in 3uq0
Sodium binding site 1 out of 1 in the Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Post-Catalytic Product Complex of Polymerase Lambda with An Ramp at the Primer Terminus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1

b:31.8
occ:1.00
 O A:SER339 2.3 19.6 1.0
OP1 P:DA5 2.3 21.8 1.0
O P:HOH122 2.4 32.2 1.0
O A:ILE341 2.5 19.4 1.0
O A:ALA344 2.5 21.3 1.0
O P:HOH16 3.3 38.4 1.0
C A:SER339 3.3 25.1 1.0
C A:ILE341 3.3 19.4 1.0
P P:DA5 3.4 25.3 1.0
C A:ALA344 3.5 21.9 1.0
OP2 P:DA5 3.6 27.7 1.0
N A:ALA344 3.8 19.2 1.0
CA A:TRP342 3.9 16.5 1.0
N A:ILE341 3.9 18.8 1.0
N A:TRP342 3.9 17.2 1.0
N A:GLY343 4.0 20.7 1.0
C A:ASN340 4.1 19.3 1.0
CA A:SER339 4.1 26.4 1.0
N A:ASN340 4.2 22.8 1.0
CA A:ASN340 4.2 24.1 1.0
CA A:ALA344 4.2 18.4 1.0
CA A:ILE341 4.2 22.3 1.0
C A:TRP342 4.3 17.6 1.0
O3' P:DT4 4.5 23.7 1.0
O5' P:DA5 4.5 24.0 1.0
N A:GLY345 4.5 21.9 1.0
O A:ASN340 4.6 21.7 1.0
CB A:SER339 4.6 22.7 1.0
CA A:GLY345 4.8 21.0 1.0
C A:GLY343 4.8 20.8 1.0
CB A:ALA344 4.8 21.9 1.0
CA A:GLY343 4.9 20.2 1.0
O A:PHE338 5.0 19.7 1.0

Reference:

R.A.Gosavi, A.F.Moon, T.A.Kunkel, L.C.Pedersen, K.Bebenek. The Catalytic Cycle For Ribonucleotide Incorporation By Human Dna Pol Lambda Nucleic Acids Res. V. 40 7518 2012.
ISSN: ISSN 0305-1048
PubMed: 22584622
DOI: 10.1093/NAR/GKS413
Page generated: Mon Oct 7 13:31:25 2024

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