Sodium in PDB 3tzl: Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane

All present enzymatic activity of Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane:
6.1.1.2;

The structure of Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane, PDB code: 3tzl was solved by Y.Kim, M.Zhou, S.Grimshaw, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.79 / 2.15
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	66.777, 50.629, 105.915, 90.00, 107.00, 90.00
R / Rfree (%)	18.1 / 21.8

The binding sites of Sodium atom in the Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane (pdb code 3tzl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane, PDB code: 3tzl:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane within 5.0Å range: probe atom residue distance (Å) B Occ A:Na336 b:58.1 occ:1.00 O3B A:ADP330 2.3 83.9 1.0 O2B A:ADP330 3.5 76.0 1.0 PB A:ADP330 3.5 75.7 1.0 OG A:SER193 3.5 62.4 1.0 N A:SER193 3.6 48.7 1.0 CB A:SER193 3.6 55.6 1.0 N A:LYS192 4.1 37.7 1.0 CB A:SER191 4.1 44.2 1.0 CA A:SER193 4.2 49.5 1.0 OG A:SER191 4.3 46.0 1.0 O1B A:ADP330 4.3 74.8 1.0 CB A:LYS192 4.3 44.7 1.0 C A:LYS192 4.5 44.5 1.0 CA A:LYS192 4.5 43.6 1.0 O2A A:ADP330 4.6 84.0 1.0 O3A A:ADP330 4.6 80.3 1.0 NZ A:LYS192 4.8 48.2 1.0 C A:SER191 4.8 37.9 1.0 CA A:SER191 4.9 38.3 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane within 5.0Å range: probe atom residue distance (Å) B Occ B:Na333 b:71.0 occ:1.00 OG B:SER193 2.3 83.4 1.0 O3B B:ADP330 2.3 90.9 1.0 O2B B:ADP330 2.9 88.9 1.0 PB B:ADP330 2.9 84.4 1.0 CB B:SER193 3.6 80.5 1.0 N B:SER193 3.6 67.7 1.0 O1B B:ADP330 3.7 81.1 1.0 CB B:SER191 3.9 59.9 1.0 OG B:SER191 3.9 63.5 1.0 N B:LYS192 4.1 58.1 1.0 CA B:SER193 4.2 76.3 1.0 O3A B:ADP330 4.4 51.9 1.0 C B:LYS192 4.6 62.9 1.0 CB B:LYS192 4.7 59.8 1.0 CA B:LYS192 4.7 60.3 1.0 C B:SER191 4.7 59.3 1.0 O2A B:ADP330 4.8 97.7 1.0 CA B:SER191 4.8 58.3 1.0

Y.Kim, M.Zhou, S.Grimshaw, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Complexed with Adp and Tryptophane To Be Published.