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Sodium in PDB 3txj: Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant

Enzymatic activity of Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant

All present enzymatic activity of Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant:
3.2.1.17;

Protein crystallography data

The structure of Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant, PDB code: 3txj was solved by S.W.M.Tanley, A.M.M.Schreurs, J.R.Helliwell, L.M.J.Kroon-Batenburg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.53 / 2.48
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.527, 78.527, 36.722, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 28.9

Other elements in 3txj:

The structure of Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant (pdb code 3txj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant, PDB code: 3txj:

Sodium binding site 1 out of 1 in 3txj

Go back to Sodium Binding Sites List in 3txj
Sodium binding site 1 out of 1 in the Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hewl Co-Crystallization with Nag with Silicone Oil As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1138

b:39.1
occ:1.00
O A:CYS64 2.3 28.9 1.0
O A:SER60 2.4 25.6 1.0
O A:ARG73 2.8 38.9 1.0
OG A:SER72 2.8 36.0 1.0
C A:CYS64 3.5 29.2 1.0
C A:SER60 3.6 26.6 1.0
CB A:SER72 3.7 36.5 1.0
CA A:ASN65 3.7 30.4 1.0
C A:ARG73 3.9 38.2 1.0
N A:ASN65 4.1 30.0 1.0
OD1 A:ASN65 4.2 33.3 1.0
CA A:SER60 4.3 25.6 1.0
CB A:THR69 4.3 36.0 1.0
CL A:CL1132 4.3 44.7 1.0
CB A:SER60 4.3 25.6 1.0
N A:ARG73 4.4 37.9 1.0
C A:SER72 4.4 37.5 1.0
N A:ASP66 4.5 31.6 1.0
O A:ARG61 4.5 29.5 1.0
OG1 A:THR69 4.5 34.5 1.0
CB A:ASN65 4.5 30.9 1.0
OD1 A:ASP66 4.5 27.4 1.0
O A:THR69 4.6 36.3 1.0
N A:CYS64 4.7 28.7 1.0
N A:ARG61 4.7 28.0 1.0
C A:ASN65 4.7 31.0 1.0
CB A:ASN74 4.7 37.6 1.0
CA A:CYS64 4.7 28.6 1.0
CA A:SER72 4.7 37.2 1.0
N A:ASN74 4.7 37.8 1.0
C A:ARG61 4.8 29.4 1.0
CA A:ARG73 4.8 38.2 1.0
O A:SER72 4.8 37.8 1.0
CA A:ASN74 4.8 37.6 1.0
CG A:ASN65 4.8 31.2 1.0
OG A:SER60 4.9 24.2 1.0

Reference:

S.W.Tanley, A.M.Schreurs, J.R.Helliwell, L.M.Kroon-Batenburg. Experience with Exchange and Archiving of Raw Data: Comparison of Data From Two Diffractometers and Four Software Packages on A Series of Lysozyme Crystals. J.Appl.Crystallogr. V. 46 108 2013.
ISSN: ISSN 0021-8898
PubMed: 23396873
DOI: 10.1107/S0021889812044172
Page generated: Tue Dec 15 06:26:48 2020

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