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Sodium in PDB 3tv2: Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei

Enzymatic activity of Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei

All present enzymatic activity of Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei:
4.2.1.2;

Protein crystallography data

The structure of Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei, PDB code: 3tv2 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.20 / 2.10
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 147.180, 147.180, 208.280, 90.00, 90.00, 120.00
R / Rfree (%) 15.6 / 17.6

Other elements in 3tv2:

The structure of Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei also contains other interesting chemical elements:

Uranium (U) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei (pdb code 3tv2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei, PDB code: 3tv2:

Sodium binding site 1 out of 1 in 3tv2

Go back to Sodium Binding Sites List in 3tv2
Sodium binding site 1 out of 1 in the Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1

b:49.2
occ:0.50
 O A:HOH852 3.2 51.9 1.0
OD2 A:ASP559 3.3 76.4 1.0
N A:ASP559 3.5 63.6 1.0
N A:TYR558 3.6 63.3 1.0
O A:HOH853 3.7 57.6 1.0
CG A:ASP559 3.7 72.7 1.0
C A:GLY557 3.9 63.0 1.0
CB A:ASP559 3.9 69.4 1.0
CA A:GLY557 4.0 62.5 1.0
CA A:TYR558 4.2 64.1 1.0
CB A:TYR558 4.3 65.2 1.0
CA A:ASP559 4.4 65.1 1.0
C A:TYR558 4.4 65.4 1.0
OD1 A:ASP559 4.4 71.6 1.0
O A:GLY557 4.7 61.6 1.0

Reference:

M.C.Clifton, J.Abendroth, Seattle Structural Genomics Center For Infectious Disease(Ssgcid), B.Sankaran. Structure of A Class II Fumarate Hydratase From Burkholderia Pseudomallei To Be Published.
Page generated: Mon Oct 7 13:21:37 2024

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