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Sodium in PDB 3trc: Structure of the Gaf Domain From A Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp) From Coxiella Burnetii

Enzymatic activity of Structure of the Gaf Domain From A Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp) From Coxiella Burnetii

All present enzymatic activity of Structure of the Gaf Domain From A Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp) From Coxiella Burnetii:
2.7.3.9;

Protein crystallography data

The structure of Structure of the Gaf Domain From A Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp) From Coxiella Burnetii, PDB code: 3trc was solved by J.Cheung, M.C.Franklin, M.Rudolph, M.Cassidy, E.Gary, F.Burshteyn, J.Love, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.23 / 1.65
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.869, 54.869, 105.256, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 21.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the Gaf Domain From A Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp) From Coxiella Burnetii (pdb code 3trc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Gaf Domain From A Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp) From Coxiella Burnetii, PDB code: 3trc:

Sodium binding site 1 out of 1 in 3trc

Go back to Sodium Binding Sites List in 3trc
Sodium binding site 1 out of 1 in the Structure of the Gaf Domain From A Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp) From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Gaf Domain From A Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp) From Coxiella Burnetii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na170

b:34.9
occ:1.00
 OH A:TYR52 2.7 24.5 1.0
N A:GLY73 2.8 20.6 1.0
OE2 A:GLU82 2.9 24.7 1.0
O A:GLY78 2.9 17.5 1.0
CG A:GLU82 3.4 20.2 1.0
CZ A:TYR52 3.5 19.0 1.0
CE2 A:TYR52 3.5 16.8 1.0
CD A:GLU82 3.5 23.8 1.0
CA A:GLY78 3.6 19.2 1.0
CA A:GLY73 3.6 21.7 1.0
C A:GLY78 3.6 18.6 1.0
C A:PHE72 3.8 18.8 1.0
CA A:PHE72 3.8 16.9 1.0
N A:GLU82 3.8 15.6 1.0
CA A:GLY81 4.0 15.2 1.0
C A:GLY81 4.1 16.5 1.0
CB A:PHE72 4.2 17.9 1.0
O A:HOH260 4.3 40.2 1.0
CB A:GLU82 4.5 18.1 1.0
N A:GLY81 4.5 14.5 1.0
CA A:GLU82 4.6 15.2 1.0
C A:GLY73 4.6 26.2 1.0
CG A:PHE72 4.7 18.2 1.0
CD1 A:PHE72 4.7 18.2 1.0
OE1 A:GLU82 4.7 25.0 1.0
CE1 A:TYR52 4.8 21.0 1.0
O A:GLY81 4.8 18.1 1.0
CD2 A:TYR52 4.8 14.9 1.0
N A:GLY78 4.8 16.8 1.0
O A:ILE77 4.9 15.2 1.0
N A:LEU79 4.9 14.1 1.0
O A:PHE72 4.9 21.1 1.0
N A:GLU74 4.9 21.1 1.0
O A:HOH314 4.9 37.1 1.0

Reference:

M.C.Franklin, J.Cheung, M.J.Rudolph, F.Burshteyn, M.Cassidy, E.Gary, B.Hillerich, Z.K.Yao, P.R.Carlier, M.Totrov, J.D.Love. Structural Genomics For Drug Design Against the Pathogen Coxiella Burnetii. Proteins V. 83 2124 2015.
ISSN: ISSN 0887-3585
PubMed: 26033498
DOI: 10.1002/PROT.24841
Page generated: Mon Oct 7 13:19:46 2024

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