Sodium in the structure of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Dose=1.9MGY) (pdb 3tmx)

The binding sites of Sodium atom in the structure of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Dose=1.9MGY) (pdb code 3tmx). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3tmx structure was solved by J.KMETKO, M.A.WARKENTIN, U.ENGLICH, R.E.THORNE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 34.0-1.9 Space group P43212 a (A) 79.678 b (A) 79.678 c (A) 37.655 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 15.3 Rfree (%) 21 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3tmx Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3tmx. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ser60, A: Arg61, A: Trp62, A: Cys64, A: Asn65, A: Asp66, A: Thr69, A: Ser72, A: Arg73, A: Asn74, A: Cl1132, A: Hoh2076, A: Hoh2081, A: Hoh2163, conact list: Atom Atom Distance (A) Na O A:Ser60 2.37 Na CB A:Ser60 4.30 Na C A:Ser60 3.51 Na CA A:Ser60 4.10 Na O A:Arg61 4.53 Na N A:Arg61 4.61 Na C A:Arg61 4.59 Na CA A:Arg61 4.87 Na N A:Trp62 4.94 Na O A:Cys64 2.37 Na N A:Cys64 4.38 Na C A:Cys64 3.48 Na CA A:Cys64 4.60 Na N A:Asn65 4.15 Na CB A:Asn65 4.74 Na C A:Asn65 4.84 Na OD1 A:Asn65 4.65 Na CA A:Asn65 3.91 Na N A:Asp66 4.67 Na CB A:Thr69 4.76 Na O A:Ser72 4.83 Na CB A:Ser72 3.40 Na OG A:Ser72 2.55 Na C A:Ser72 4.28 Na CA A:Ser72 4.49 Na O A:Arg73 2.52 Na N A:Arg73 4.06 Na C A:Arg73 3.61 Na CA A:Arg73 4.47 Na N A:Asn74 4.45 Na CB A:Asn74 4.68 Na CA A:Asn74 4.57 Na CL A:Cl1132 4.78 Na O A:Hoh2076 2.40 Na O A:Hoh2081 2.49 Na O A:Hoh2163 4.58 interactive model: