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Sodium in PDB 3tmw: X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)

Enzymatic activity of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)

All present enzymatic activity of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed):
3.2.1.17;

Protein crystallography data

The structure of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed), PDB code: 3tmw was solved by J.Kmetko, M.A.Warkentin, U.Englich, R.E.Thorne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.78 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.550, 79.550, 37.611, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 20.4

Other elements in 3tmw:

The structure of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) (pdb code 3tmw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed), PDB code: 3tmw:

Sodium binding site 1 out of 1 in 3tmw

Go back to Sodium Binding Sites List in 3tmw
Sodium binding site 1 out of 1 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1138

b:18.7
occ:1.00
 O A:HOH2076 2.4 9.3 1.0
O A:CYS64 2.4 8.3 1.0
O A:SER60 2.4 11.8 1.0
O A:HOH2081 2.4 13.5 1.0
O A:ARG73 2.5 17.0 1.0
OG A:SER72 2.6 23.9 1.0
CB A:SER72 3.4 22.7 1.0
C A:CYS64 3.5 7.1 1.0
C A:SER60 3.5 13.0 1.0
C A:ARG73 3.6 17.2 1.0
CA A:ASN65 3.9 8.8 1.0
N A:ARG73 4.0 20.0 1.0
N A:ASN65 4.1 8.5 1.0
CA A:SER60 4.1 10.3 1.0
C A:SER72 4.3 22.6 1.0
CB A:SER60 4.4 9.7 1.0
N A:CYS64 4.4 6.9 1.0
CA A:ARG73 4.5 18.1 1.0
N A:ASN74 4.5 14.6 1.0
CA A:SER72 4.5 22.8 1.0
O A:HOH2163 4.6 33.7 1.0
CA A:ASN74 4.6 13.3 1.0
CA A:CYS64 4.6 7.9 1.0
O A:ARG61 4.6 17.4 1.0
N A:ASP66 4.6 8.5 1.0
OD1 A:ASN65 4.6 16.5 1.0
CB A:ASN74 4.6 14.1 1.0
N A:ARG61 4.6 14.4 1.0
C A:ARG61 4.7 16.4 1.0
CB A:ASN65 4.7 8.0 1.0
CL A:CL1132 4.8 22.9 1.0
CB A:THR69 4.8 17.5 1.0
C A:ASN65 4.8 7.9 1.0
O A:SER72 4.9 21.6 1.0
CA A:ARG61 4.9 17.5 1.0
N A:TRP62 5.0 15.5 1.0

Reference:

J.Kmetko, M.Warkentin, U.Englich, R.E.Thorne. Can Radiation Damage to Protein Crystals Be Reduced Using Small-Molecule Compounds? Acta Crystallogr.,Sect.D V. 67 881 2011.
ISSN: ISSN 0907-4449
PubMed: 21931220
DOI: 10.1107/S0907444911032835
Page generated: Mon Oct 7 13:18:41 2024

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