Atomistry » Sodium » PDB 3tkj-3tzl » 3tmu
Atomistry »
  Sodium »
    PDB 3tkj-3tzl »
      3tmu »

Sodium in PDB 3tmu: X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)

Enzymatic activity of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)

All present enzymatic activity of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed):
3.2.1.17;

Protein crystallography data

The structure of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed), PDB code: 3tmu was solved by J.Kmetko, M.A.Warkentin, U.Englich, R.E.Thorne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.80 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.050, 80.050, 38.636, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 19.5

Other elements in 3tmu:

The structure of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) (pdb code 3tmu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed), PDB code: 3tmu:

Sodium binding site 1 out of 1 in 3tmu

Go back to Sodium Binding Sites List in 3tmu
Sodium binding site 1 out of 1 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1138

b:22.1
occ:1.00
 O A:SER60 2.3 16.2 1.0
O A:CYS64 2.4 14.6 1.0
O A:ARG73 2.5 25.5 1.0
O A:HOH2081 2.5 27.3 1.0
OG A:SER72 2.6 27.6 1.0
O A:HOH2076 2.7 16.7 1.0
CB A:SER72 3.3 28.9 1.0
C A:CYS64 3.5 12.7 1.0
C A:SER60 3.5 15.1 1.0
C A:ARG73 3.6 24.7 1.0
CA A:ASN65 4.0 14.5 1.0
N A:ARG73 4.1 26.1 1.0
C A:SER72 4.1 28.3 1.0
N A:ASN65 4.1 12.8 1.0
CA A:SER60 4.2 13.5 1.0
CA A:SER72 4.3 29.1 1.0
N A:CYS64 4.4 12.9 1.0
O A:ARG61 4.4 20.7 1.0
CA A:ARG73 4.4 25.7 1.0
N A:ASN74 4.4 22.2 1.0
C A:ARG61 4.5 20.5 1.0
CB A:SER60 4.5 12.8 1.0
N A:ARG61 4.6 15.5 1.0
CA A:ASN74 4.6 19.7 1.0
CA A:CYS64 4.6 13.2 1.0
O A:SER72 4.6 27.3 1.0
CB A:ASN74 4.7 18.6 1.0
CA A:ARG61 4.7 21.0 1.0
O A:HOH2148 4.8 47.4 1.0
CL A:CL1132 4.8 43.5 1.0
CB A:THR69 4.8 18.5 1.0
N A:ASP66 4.9 12.2 1.0
N A:TRP62 4.9 19.0 1.0
CB A:ASN65 4.9 14.0 1.0
OD1 A:ASN65 4.9 26.4 1.0
N A:TRP63 4.9 15.3 1.0
C A:ASN65 5.0 12.3 1.0

Reference:

J.Kmetko, M.Warkentin, U.Englich, R.E.Thorne. Can Radiation Damage to Protein Crystals Be Reduced Using Small-Molecule Compounds? Acta Crystallogr.,Sect.D V. 67 881 2011.
ISSN: ISSN 0907-4449
PubMed: 21931220
DOI: 10.1107/S0907444911032835
Page generated: Mon Oct 7 13:18:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy