Sodium in PDB 3r4t: Crystal Structure of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound to Pyridoxal Phosphate

The structure of Crystal Structure of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound to Pyridoxal Phosphate, PDB code: 3r4t was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.50
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	123.620, 123.620, 157.590, 90.00, 90.00, 120.00
R / Rfree (%)	15.1 / 19.1

The structure of Crystal Structure of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound to Pyridoxal Phosphate also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Sodium atom in the Crystal Structure of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound to Pyridoxal Phosphate (pdb code 3r4t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound to Pyridoxal Phosphate, PDB code: 3r4t:

Sodium binding site 1 out of 1 in the Crystal Structure of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound to Pyridoxal Phosphate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound to Pyridoxal Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Na451 b:40.7 occ:1.00 O A:HOH654 2.5 30.6 1.0 O A:HOH653 2.5 35.8 1.0 O A:ALA27 2.6 24.4 1.0 C A:ALA27 3.7 24.3 1.0 CA A:ALA27 4.1 24.7 1.0 CB A:ALA27 4.3 25.1 1.0 O A:HOH572 4.3 31.8 1.0 O A:VAL30 4.6 23.8 1.0 N A:ALA28 4.8 24.0 1.0

L.Baugh, I.Phan, D.W.Begley, M.C.Clifton, B.Armour, D.M.Dranow, B.M.Taylor, M.M.Muruthi, J.Abendroth, J.W.Fairman, D.Fox, S.H.Dieterich, B.L.Staker, A.S.Gardberg, R.Choi, S.N.Hewitt, A.J.Napuli, J.Myers, L.K.Barrett, Y.Zhang, M.Ferrell, E.Mundt, K.Thompkins, N.Tran, S.Lyons-Abbott, A.Abramov, A.Sekar, D.Serbzhinskiy, D.Lorimer, G.W.Buchko, R.Stacy, L.J.Stewart, T.E.Edwards, W.C.Van Voorhis, P.J.Myler. Increasing the Structural Coverage of Tuberculosis Drug Targets. Tuberculosis (Edinb) V. 95 142 2015.
ISSN: ISSN 1472-9792
PubMed: 25613812
DOI: 10.1016/J.TUBE.2014.12.003