Atomistry » Sodium » PDB 3qq0-3r57 » 3qvt
Atomistry »
  Sodium »
    PDB 3qq0-3r57 »
      3qvt »

Sodium in PDB 3qvt: L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus Fulgidus Wild- Type with the Intermediate 5-Keto 1-Phospho Glucose

Enzymatic activity of L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus Fulgidus Wild- Type with the Intermediate 5-Keto 1-Phospho Glucose

All present enzymatic activity of L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus Fulgidus Wild- Type with the Intermediate 5-Keto 1-Phospho Glucose:
5.5.1.4;

Protein crystallography data

The structure of L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus Fulgidus Wild- Type with the Intermediate 5-Keto 1-Phospho Glucose, PDB code: 3qvt was solved by K.Neelon, M.F.Roberts, B.Stec, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.20 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 82.780, 89.590, 105.020, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 24.8

Sodium Binding Sites:

The binding sites of Sodium atom in the L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus Fulgidus Wild- Type with the Intermediate 5-Keto 1-Phospho Glucose (pdb code 3qvt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus Fulgidus Wild- Type with the Intermediate 5-Keto 1-Phospho Glucose, PDB code: 3qvt:

Sodium binding site 1 out of 1 in 3qvt

Go back to Sodium Binding Sites List in 3qvt
Sodium binding site 1 out of 1 in the L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus Fulgidus Wild- Type with the Intermediate 5-Keto 1-Phospho Glucose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus Fulgidus Wild- Type with the Intermediate 5-Keto 1-Phospho Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na525

b:23.6
occ:0.50
OD2 A:ASP329 2.5 15.6 1.0
O A:HOH584 3.3 34.0 0.5
CG A:ASP329 3.6 17.5 1.0
CB A:ASP329 4.1 14.7 1.0
OD1 A:ASP329 4.6 14.6 1.0

Reference:

K.Neelon, M.F.Roberts, B.Stec. Atomic Crowding Drives the Catalysis of Myo-Inositol Phosphate Synthase, As Deduced From A Crystal Structure of A Trapped Catalytic Intermediate To Be Published.
Page generated: Tue Dec 15 06:23:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy