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Sodium in PDB 3qsr: Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile-45 Variant)

Protein crystallography data

The structure of Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile-45 Variant), PDB code: 3qsr was solved by S.Lara-Gonzalez, H.Salgado-Lugo, L.G.Brieba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.85 / 2.05
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.820, 55.750, 103.940, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 22.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile-45 Variant) (pdb code 3qsr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile-45 Variant), PDB code: 3qsr:

Sodium binding site 1 out of 1 in 3qsr

Go back to Sodium Binding Sites List in 3qsr
Sodium binding site 1 out of 1 in the Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile-45 Variant)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile-45 Variant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na253

b:33.4
occ:1.00
O A:CSO224 2.6 16.6 1.0
OG A:SER251 2.7 20.6 1.0
O A:ALA222 2.8 18.1 1.0
O A:VAL227 2.8 13.7 1.0
O A:HOH347 2.9 25.9 1.0
O A:HOH406 3.2 38.5 1.0
C A:CSO224 3.6 16.1 1.0
CB A:SER251 3.7 27.4 1.0
O A:PRO225 3.8 15.3 1.0
C A:VAL227 3.8 15.2 1.0
C A:ALA222 4.0 16.8 1.0
CA A:SER251 4.0 30.7 1.0
C A:PRO225 4.0 17.4 1.0
CA A:PRO225 4.1 19.4 1.0
C A:ALA223 4.1 19.2 1.0
N A:VAL227 4.2 14.2 1.0
O A:ALA223 4.2 24.6 1.0
N A:PRO225 4.3 15.3 1.0
N A:CSO224 4.3 20.2 1.0
C A:SER251 4.3 32.3 1.0
CA A:VAL227 4.5 15.6 1.0
CA A:CSO224 4.5 20.3 1.0
CA A:ALA223 4.6 22.5 1.0
CB A:VAL227 4.7 14.9 1.0
N A:ASP226 4.7 18.9 1.0
N A:ALA223 4.7 19.9 1.0
N A:ASP228 4.9 15.9 1.0
CA A:ALA222 5.0 18.8 1.0
CE1 A:PHE4 5.0 16.8 1.0

Reference:

H.Salgado-Lugo, S.Lara-Gonzalez, L.G.Brieba. Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene To Be Published.
Page generated: Mon Oct 7 12:41:25 2024

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