Sodium in PDB 3qr7: Crystal Structure of the C-Terminal Fragment of the Bacteriophage P2 Membrane-Piercing Protein Gpv

The structure of Crystal Structure of the C-Terminal Fragment of the Bacteriophage P2 Membrane-Piercing Protein Gpv, PDB code: 3qr7 was solved by C.Browning, M.Shneider, P.G.Leiman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.33 / 0.94
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	49.069, 49.069, 463.896, 90.00, 90.00, 120.00
R / Rfree (%)	10.2 / 11.2

The structure of Crystal Structure of the C-Terminal Fragment of the Bacteriophage P2 Membrane-Piercing Protein Gpv also contains other interesting chemical elements:

Iron	(Fe)	2 atoms
Calcium	(Ca)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the Crystal Structure of the C-Terminal Fragment of the Bacteriophage P2 Membrane-Piercing Protein Gpv (pdb code 3qr7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the C-Terminal Fragment of the Bacteriophage P2 Membrane-Piercing Protein Gpv, PDB code: 3qr7:

Sodium binding site 1 out of 1 in the Crystal Structure of the C-Terminal Fragment of the Bacteriophage P2 Membrane-Piercing Protein Gpv


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the C-Terminal Fragment of the Bacteriophage P2 Membrane-Piercing Protein Gpv within 5.0Å range: probe atom residue distance (Å) B Occ A:Na213 b:14.5 occ:1.00 O A:HOH281 2.8 17.9 0.7 O A:HIS182 2.8 8.2 1.0 HG3 A:GLU181 2.9 15.7 0.6 HG2 A:GLU181 3.3 15.7 0.6 H A:HIS182 3.5 9.9 1.0 HG22 A:THR183 3.5 12.7 1.0 CG A:GLU181 3.5 13.1 0.6 HG23 A:THR183 3.6 12.7 1.0 HA A:GLU181 3.7 12.8 0.4 HA A:GLU181 3.7 10.2 0.6 HB3 A:GLU181 3.8 18.5 0.4 C A:HIS182 3.8 7.7 1.0 N A:HIS182 3.8 8.3 1.0 CG2 A:THR183 4.0 10.6 1.0 HG3 A:GLU181 4.1 23.9 0.4 CA A:GLU181 4.3 10.7 0.4 CB A:GLU181 4.3 15.4 0.4 CA A:GLU181 4.3 8.5 0.6 OE1 A:GLU181 4.3 27.5 0.6 C A:GLU181 4.3 8.4 1.0 HG2 A:GLU181 4.4 23.9 0.4 HG21 A:THR183 4.4 12.7 1.0 CA A:HIS182 4.5 7.7 1.0 CG A:GLU181 4.5 19.9 0.4 CD A:GLU181 4.5 25.0 0.6 CB A:GLU181 4.5 11.0 0.6 HA A:THR183 4.8 10.0 1.0 HB3 A:HIS182 4.8 9.3 1.0 N A:THR183 4.8 7.6 1.0 HB2 A:GLU181 4.9 13.2 0.6

C.Browning, M.M.Shneider, V.D.Bowman, D.Schwarzer, P.G.Leiman. Phage Pierces the Host Cell Membrane with the Iron-Loaded Spike. Structure V. 20 326 2012.
ISSN: ISSN 0969-2126
PubMed: 22325780
DOI: 10.1016/J.STR.2011.12.009