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Sodium in PDB 3qoo: Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans

Protein crystallography data

The structure of Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans, PDB code: 3qoo was solved by K.Michalska, H.Li, S.Clancy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.38 / 1.25
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 38.078, 38.078, 142.148, 90.00, 90.00, 120.00
R / Rfree (%) 15.6 / 18.1

Other elements in 3qoo:

The structure of Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans (pdb code 3qoo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans, PDB code: 3qoo:

Sodium binding site 1 out of 1 in 3qoo

Go back to Sodium Binding Sites List in 3qoo
Sodium binding site 1 out of 1 in the Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na136

b:16.0
occ:1.00
O A:HOH182 2.4 24.6 1.0
OG A:SER22 2.4 13.8 1.0
O A:HOH167 2.4 24.0 1.0
O A:HOH152 2.5 14.9 1.0
OG A:SER20 2.5 14.8 1.0
CB A:SER22 3.4 13.0 1.0
CB A:SER20 3.5 11.8 1.0
N A:SER22 4.1 11.8 1.0
O A:HOH218 4.3 24.8 0.6
CA A:SER22 4.3 12.7 1.0
O A:HOH196 4.3 30.6 1.0
OD2 A:ASP23 4.6 15.1 1.0
O A:HOH217 4.7 32.2 1.0
CA A:SER20 4.8 10.6 1.0
C A:SER20 4.9 10.2 1.0
N A:VAL21 4.9 10.9 0.6
N A:VAL21 4.9 11.0 0.4

Reference:

K.Michalska, H.Li, S.Clancy, A.Joachimiak. Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans To Be Published.
Page generated: Tue Dec 15 06:22:57 2020

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