Atomistry » Sodium » PDB 3q11-3qpz » 3qng
Atomistry »
  Sodium »
    PDB 3q11-3qpz »
      3qng »

Sodium in PDB 3qng: Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)]

Enzymatic activity of Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)]

All present enzymatic activity of Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)]:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)], PDB code: 3qng was solved by F.Zobi, B.Spingler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.12 / 1.55
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.343, 78.343, 36.546, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.7

Other elements in 3qng:

The structure of Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)] also contains other interesting chemical elements:

Rhenium (Re) 1 atom
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)] (pdb code 3qng). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)], PDB code: 3qng:

Sodium binding site 1 out of 1 in 3qng

Go back to Sodium Binding Sites List in 3qng
Sodium binding site 1 out of 1 in the Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)]


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of Lysozyme-Bound Fac-[Re(Co)3(L-Serine)] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na220

b:29.6
occ:1.00
 O A:SER60 2.2 26.4 1.0
O A:HOH322 2.4 22.2 1.0
O A:ARG73 2.4 35.4 1.0
O A:HOH362 2.4 27.2 1.0
O A:CYS64 2.5 20.2 1.0
OG A:SER72 2.6 34.9 1.0
C A:SER60 3.3 23.7 1.0
CB A:SER72 3.4 24.3 1.0
C A:ARG73 3.4 35.4 1.0
C A:CYS64 3.5 18.9 1.0
CA A:SER60 4.0 17.8 1.0
CA A:ASN65 4.0 23.2 1.0
N A:ARG73 4.0 34.6 1.0
N A:ASN65 4.2 20.9 1.0
CB A:SER60 4.2 18.4 1.0
CA A:ARG73 4.3 28.0 1.0
N A:ASN74 4.3 23.4 1.0
C A:SER72 4.3 46.2 1.0
N A:CYS64 4.4 22.3 1.0
O A:ARG61 4.4 27.2 1.0
N A:ARG61 4.5 22.4 1.0
C A:ARG61 4.5 34.2 1.0
CA A:SER72 4.5 35.8 1.0
CA A:ASN74 4.6 19.6 1.0
CA A:CYS64 4.6 22.3 1.0
O A:HOH301 4.6 20.4 1.0
N A:ASP66 4.6 16.8 1.0
CB A:THR69 4.6 24.6 1.0
OD1 A:ASN65 4.7 25.3 1.0
CA A:ARG61 4.7 31.8 1.0
C A:ASN65 4.8 17.8 1.0
N A:TRP62 4.9 24.9 1.0
CB A:ASN74 4.9 27.3 1.0
CB A:ASN65 4.9 21.9 1.0
O A:SER72 4.9 39.9 1.0
N A:TRP63 5.0 20.2 1.0
OG1 A:THR69 5.0 21.6 1.0
OG A:SER60 5.0 21.0 1.0

Reference:

F.Zobi, B.Spingler. Post-Protein-Binding Reactivity and Modifications of the Fac-[Re(Co)3]+ Core Inorg.Chem. V. 51 1210 2012.
ISSN: ISSN 0020-1669
PubMed: 22229733
DOI: 10.1021/IC2023314
Page generated: Tue Dec 15 06:22:56 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy