Sodium in the structure of Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 (pdb 3qi6)

The binding sites of Sodium atom in the structure of Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 (pdb code 3qi6). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3qi6 structure was solved by SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 44.5-1.9 Space group P1211 a (A) 80.956 b (A) 106.924 c (A) 100.307 alpha (°) 90.00 beta (°) 113.67 gamma (°) 90.00 Rfactor (%) 20 Rfree (%) 24.1 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3qi6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3qi6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Thr206, A: Thr207, A: Llp208, A: Gly211, A: Gly212, A: His213, A: Ser214, A: Asp215, A: Val216, A: Val217, B: Ser40, A: Hoh405, A: Hoh1595, B: Hoh473, conact list: Atom Atom Distance (A) Na O A:Thr206 4.35 Na O A:Thr207 2.77 Na N A:Thr207 4.89 Na CB A:Thr207 4.55 Na CG2 A:Thr207 4.07 Na C A:Thr207 3.55 Na CA A:Thr207 3.77 Na N A:Llp208 4.74 Na O A:Llp208 4.72 Na C A:Gly211 4.86 Na CA A:Gly211 4.72 Na N A:Gly212 4.62 Na N A:His213 4.52 Na C A:His213 4.35 Na O A:Ser214 4.65 Na N A:Ser214 3.42 Na CB A:Ser214 4.78 Na C A:Ser214 3.57 Na CA A:Ser214 3.36 Na N A:Asp215 3.12 Na C A:Asp215 4.16 Na OD1 A:Asp215 4.44 Na CA A:Asp215 4.15 Na O A:Val216 2.78 Na N A:Val216 3.22 Na CB A:Val216 4.66 Na C A:Val216 3.66 Na CG1 A:Val216 4.19 Na CA A:Val216 3.97 Na N A:Val217 4.80 Na CB B:Ser40 4.38 Na OG B:Ser40 4.23 Na O A:Hoh405 3.64 Na O A:Hoh1595 2.60 Na O B:Hoh473 3.92 interactive model: