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Sodium in PDB 3qhx: Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes

Enzymatic activity of Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes

All present enzymatic activity of Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes:
2.5.1.48;

Protein crystallography data

The structure of Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes, PDB code: 3qhx was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.23 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.963, 106.326, 100.548, 90.00, 113.72, 90.00
R / Rfree (%) 14.8 / 18.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes (pdb code 3qhx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes, PDB code: 3qhx:

Sodium binding site 1 out of 1 in 3qhx

Go back to Sodium Binding Sites List in 3qhx
Sodium binding site 1 out of 1 in the Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na390

b:26.7
occ:1.00
 O C:HOH2537 2.5 30.1 1.0
N C:VAL217 2.9 7.3 1.0
O C:HOH2089 3.0 14.0 1.0
O D:HOH2330 3.1 24.4 1.0
O D:HOH400 3.3 18.7 1.0
OD2 C:ASP247 3.3 23.9 1.0
CA C:VAL216 3.5 6.7 1.0
CD D:PRO245 3.5 9.9 1.0
CG C:ASP247 3.7 16.8 1.0
C C:VAL216 3.7 8.2 1.0
OD1 C:ASP247 3.8 22.5 1.0
CB C:VAL217 3.8 6.5 1.0
CA C:VAL217 3.9 4.5 1.0
O C:VAL217 4.0 6.1 1.0
CG2 C:VAL217 4.1 7.7 1.0
CG2 C:VAL216 4.1 10.6 1.0
CA D:GLY244 4.2 9.4 1.0
O D:HOH1898 4.4 13.6 1.0
CB C:VAL216 4.4 9.5 1.0
O C:HOH2090 4.4 25.4 1.0
O C:ASP215 4.4 12.8 1.0
C C:VAL217 4.4 5.5 1.0
N C:VAL216 4.5 7.1 1.0
CG D:PRO245 4.5 9.5 1.0
N D:PRO245 4.7 7.8 1.0
C C:ASP215 4.7 10.5 1.0
CB C:ASP247 4.9 7.9 1.0
O C:VAL216 4.9 11.0 1.0

Reference:

M.C.Clifton, J.Abendroth, T.E.Edwards, D.J.Leibly, A.K.Gillespie, M.Ferrell, S.H.Dieterich, I.Exley, B.L.Staker, P.J.Myler, W.C.Van Voorhis, L.J.Stewart. Structure of the Cystathionine [Gamma]-Synthase Metb From Mycobacterium Ulcerans Acta Crystallogr.,Sect.F V. 67 1154 2011.
ISSN: ESSN 1744-3091
PubMed: 21904066
DOI: 10.1107/S1744309111029575
Page generated: Mon Oct 7 12:33:03 2024

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