Sodium in PDB 3q94: The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor'

All present enzymatic activity of The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor':
4.1.2.13;

The structure of The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor', PDB code: 3q94 was solved by K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.51 / 2.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	95.155, 95.155, 155.967, 90.00, 90.00, 120.00
R / Rfree (%)	16.6 / 22.2

The structure of The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor' also contains other interesting chemical elements:

Zinc

(Zn)

10 atoms

The binding sites of Sodium atom in the The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor' (pdb code 3q94). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor', PDB code: 3q94:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor'


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor' within 5.0Å range: probe atom residue distance (Å) B Occ A:Na310 b:22.9 occ:1.00 O A:THR212 2.5 19.3 1.0 O1P A:13P321 2.5 14.5 1.0 O A:VAL180 2.5 20.6 1.0 O A:GLY182 2.5 22.8 1.0 O A:GLY210 2.7 19.5 1.0 CE2 A:TYR184 3.1 24.7 1.0 C A:GLY210 3.2 22.8 1.0 CA A:GLY210 3.5 19.5 1.0 C A:THR212 3.5 22.3 1.0 C A:GLY182 3.6 25.4 1.0 N A:GLY182 3.6 21.7 1.0 N A:THR212 3.6 17.7 1.0 CZ A:TYR184 3.7 24.0 1.0 C A:VAL180 3.7 21.3 1.0 CD2 A:TYR184 3.8 25.6 1.0 OH A:TYR184 3.8 14.9 1.0 CA A:THR212 3.9 22.7 1.0 CB A:THR212 4.0 24.1 1.0 P A:13P321 4.0 21.4 1.0 N A:GLY211 4.1 20.1 1.0 CA A:GLY182 4.1 12.7 1.0 C A:HIS181 4.1 23.3 1.0 C A:GLY211 4.2 23.8 1.0 CA A:HIS181 4.3 14.0 1.0 O2P A:13P321 4.4 21.6 1.0 N A:HIS181 4.5 16.6 1.0 CA A:GLY211 4.7 20.4 1.0 N A:GLY213 4.7 13.7 1.0 N A:PRO183 4.7 27.5 1.0 CA A:VAL180 4.7 20.6 1.0 N A:VAL180 4.8 14.2 1.0 O1 A:13P321 4.8 22.8 1.0 CE1 A:TYR184 4.8 20.3 1.0 CB A:VAL180 4.9 21.3 1.0 CG2 A:THR212 4.9 24.4 1.0 CG A:TYR184 4.9 22.9 1.0 O A:GLY211 4.9 24.2 1.0 CA A:PRO183 4.9 19.7 1.0 N A:GLY210 4.9 22.6 1.0 O3P A:13P321 5.0 19.8 1.0 OG1 A:THR212 5.0 21.9 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor'


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor' within 5.0Å range: probe atom residue distance (Å) B Occ B:Na311 b:30.9 occ:1.00 O2P B:13P321 2.5 20.9 1.0 O B:VAL180 2.5 21.6 1.0 O B:THR212 2.6 25.9 1.0 O B:GLY182 2.7 25.5 1.0 O B:GLY210 2.8 18.5 1.0 CE2 B:TYR184 3.1 25.2 1.0 C B:GLY210 3.2 18.9 1.0 CA B:GLY210 3.5 14.3 1.0 C B:THR212 3.5 23.7 1.0 CZ B:TYR184 3.6 28.2 1.0 N B:THR212 3.7 25.6 1.0 C B:VAL180 3.7 23.1 1.0 N B:GLY182 3.7 24.2 1.0 C B:GLY182 3.7 25.2 1.0 OH B:TYR184 3.7 24.1 1.0 CD2 B:TYR184 3.8 25.9 1.0 CA B:THR212 3.9 22.5 1.0 P B:13P321 4.0 23.4 1.0 CB B:THR212 4.1 22.3 1.0 N B:GLY211 4.2 16.2 1.0 C B:GLY211 4.2 26.0 1.0 CA B:GLY182 4.2 21.9 1.0 C B:HIS181 4.3 25.9 1.0 CA B:HIS181 4.4 27.5 1.0 O3P B:13P321 4.4 27.6 1.0 N B:HIS181 4.5 27.5 1.0 N B:GLY213 4.7 21.4 1.0 CE1 B:TYR184 4.7 29.3 1.0 CA B:VAL180 4.7 23.9 1.0 N B:VAL180 4.7 23.1 1.0 CA B:GLY211 4.7 17.0 1.0 N B:PRO183 4.8 32.1 1.0 CG B:TYR184 4.8 29.2 1.0 O1 B:13P321 4.8 33.3 1.0 O B:GLY211 4.8 29.6 1.0 CB B:VAL180 4.9 28.5 1.0 CG2 B:THR212 4.9 16.5 1.0 N B:GLY210 4.9 19.7 1.0

K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor'. To Be Published.