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Sodium in PDB 3pkf: Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide

Enzymatic activity of Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide

All present enzymatic activity of Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide, PDB code: 3pkf was solved by G.Marassio, N.Colloc'h, T.Prange, J.H.Abraini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.76 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.374, 96.302, 105.542, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.1

Other elements in 3pkf:

The structure of Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide also contains other interesting chemical elements:

Xenon (Xe) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide (pdb code 3pkf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide, PDB code: 3pkf:

Sodium binding site 1 out of 1 in 3pkf

Go back to Sodium Binding Sites List in 3pkf
Sodium binding site 1 out of 1 in the Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Urate Oxidase Under 0.2 Mpa / 2 Bars Pressure of Equimolar Mixture of Xenon and Nitrous Oxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:28.7
occ:1.00
 O A:ILE88 2.3 23.1 1.0
O A:HOH558 2.3 46.8 1.0
O A:ILE94 2.5 19.4 1.0
O A:TYR91 2.7 22.2 1.0
OE1 A:GLU136 2.7 33.1 1.0
O A:ASN92 3.3 25.4 1.0
C A:ILE88 3.4 22.4 1.0
C A:ILE94 3.6 18.5 1.0
CD A:GLU136 3.6 33.9 1.0
C A:ASN92 3.7 24.0 1.0
C A:TYR91 3.7 22.9 1.0
CA A:ILE88 3.8 21.6 1.0
CA A:ASN92 4.0 25.4 1.0
ND1 A:HIS95 4.0 23.9 1.0
OE2 A:GLU136 4.1 36.9 1.0
CB A:ILE88 4.2 22.0 1.0
N A:ILE94 4.2 19.5 1.0
N A:ASN92 4.3 23.6 1.0
CA A:ILE94 4.5 18.7 1.0
CE1 A:HIS95 4.5 24.5 1.0
N A:GLU89 4.6 22.1 1.0
N A:HIS95 4.6 17.8 1.0
N A:HIS93 4.6 22.8 1.0
CA A:HIS95 4.6 17.7 1.0
CG A:GLU136 4.8 29.9 1.0
O A:PHE87 4.8 20.1 1.0
CB A:ILE94 4.9 18.8 1.0
CA A:TYR91 4.9 22.3 1.0
N A:TYR91 4.9 22.5 1.0
C A:HIS93 5.0 20.9 1.0
CA A:GLU89 5.0 23.6 1.0

Reference:

G.Marassio, T.Prange, H.N.David, J.Sopkova-De Oliveira Santos, L.Gabison, N.Delcroix, J.H.Abraini, N.Colloc'h. Pressure-Response Analysis of Anesthetic Gases Xenon and Nitrous Oxide on Urate Oxidase: A Crystallographic Study. Faseb J. V. 25 2266 2011.
ISSN: ISSN 0892-6638
PubMed: 21421845
DOI: 10.1096/FJ.11-183046
Page generated: Mon Oct 7 12:16:01 2024

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