Sodium in PDB 3pj0: Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution

The structure of Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution, PDB code: 3pj0 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.70 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	85.593, 96.642, 99.478, 90.00, 110.81, 90.00
R / Rfree (%)	16.2 / 19.8

The structure of Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution (pdb code 3pj0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution, PDB code: 3pj0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na366 b:27.4 occ:1.00 O A:HOH732 2.3 19.3 1.0 O A:HOH1126 2.5 32.3 1.0 O A:HOH946 2.7 26.4 1.0 O A:HOH934 2.8 20.5 1.0 O A:ILE34 3.5 13.9 1.0 O A:HOH672 3.6 14.8 1.0 O A:HOH1353 3.9 34.9 1.0 O A:HOH1503 4.0 20.5 0.5 O A:GLN32 4.1 11.4 1.0 OD2 A:ASP36 4.4 24.4 1.0 OD1 A:ASP36 4.5 20.7 1.0 C A:ILE34 4.6 13.1 1.0 CG A:ASP36 4.6 18.7 1.0 O A:LEU31 4.8 11.8 1.0 O A:HOH1503 4.8 19.3 0.5 N A:ASP36 4.8 14.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Na367 b:37.1 occ:1.00 O C:HOH1542 2.1 35.2 1.0 O C:ASN274 2.2 31.4 1.0 O C:CYS276 2.4 36.6 1.0 O C:VAL279 2.4 33.0 1.0 C C:ASN274 3.3 31.5 1.0 C C:CYS276 3.6 37.5 1.0 C C:VAL279 3.6 31.9 1.0 CA C:ASN274 3.9 29.1 1.0 N C:CYS276 4.0 35.9 1.0 N C:VAL279 4.0 34.6 1.0 O C:HOH1718 4.2 26.4 1.0 O C:PHE273 4.3 30.1 1.0 C C:SER275 4.3 36.2 1.0 CA C:VAL279 4.3 32.9 1.0 N C:SER275 4.3 32.9 1.0 CA C:CYS276 4.4 37.3 1.0 N C:SER277 4.6 38.9 1.0 CB C:VAL279 4.6 33.4 1.0 CA C:SER275 4.7 35.3 1.0 N C:GLY278 4.7 37.4 1.0 N C:LYS280 4.7 30.0 1.0 CA C:SER277 4.7 39.1 1.0 CB C:ASN274 4.8 28.1 1.0 O C:SER275 4.8 37.5 1.0 CA C:LYS280 4.9 29.1 1.0 N C:ASN274 5.0 28.5 1.0 C C:SER277 5.0 38.3 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.