Sodium in PDB 3pg0: Crystal Structure of Designed 3-Fold Symmetric Protein, Threefoil

The structure of Crystal Structure of Designed 3-Fold Symmetric Protein, Threefoil, PDB code: 3pg0 was solved by Y.D.Lobsanov, A.Broom, P.L.Howell, D.R.Rose, E.M.Meiering, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.26 / 1.62
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	45.012, 45.012, 113.439, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 18.4

The binding sites of Sodium atom in the Crystal Structure of Designed 3-Fold Symmetric Protein, Threefoil (pdb code 3pg0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Designed 3-Fold Symmetric Protein, Threefoil, PDB code: 3pg0:

Sodium binding site 1 out of 1 in the Crystal Structure of Designed 3-Fold Symmetric Protein, Threefoil


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Designed 3-Fold Symmetric Protein, Threefoil within 5.0Å range: probe atom residue distance (Å) B Occ A:Na147 b:10.7 occ:1.00 OD1 A:ASN122 2.4 11.9 1.0 O A:VAL76 2.5 10.9 1.0 OD1 A:ASN28 2.5 11.9 1.0 O A:VAL123 2.5 9.7 1.0 OD1 A:ASN75 2.5 12.3 1.0 O A:VAL29 2.5 9.5 1.0 CG A:ASN122 3.3 10.9 1.0 CG A:ASN28 3.3 11.7 1.0 CG A:ASN75 3.4 12.4 1.0 C A:VAL76 3.5 10.9 1.0 C A:VAL123 3.6 9.5 1.0 N A:VAL76 3.6 8.9 1.0 N A:VAL123 3.6 7.8 1.0 C A:VAL29 3.6 9.5 1.0 ND2 A:ASN28 3.7 13.2 1.0 N A:VAL29 3.7 8.2 1.0 ND2 A:ASN122 3.7 11.2 1.0 ND2 A:ASN75 3.8 12.3 1.0 CA A:VAL76 4.0 9.3 1.0 CA A:VAL123 4.0 7.7 1.0 CA A:VAL29 4.1 6.7 1.0 CB A:VAL76 4.3 7.5 1.0 CB A:VAL123 4.4 6.8 1.0 CB A:VAL29 4.4 7.3 1.0 C A:ASN122 4.5 10.6 1.0 CB A:ASN122 4.6 9.6 1.0 C A:ASN75 4.6 9.1 1.0 C A:ASN28 4.6 8.5 1.0 CB A:ASN28 4.6 8.8 1.0 CB A:ASN75 4.7 11.1 1.0 CA A:ASN122 4.7 8.6 1.0 N A:ILE77 4.7 8.2 1.0 N A:ILE124 4.7 7.7 1.0 CA A:ASN75 4.8 8.5 1.0 N A:ILE30 4.8 7.6 1.0 CA A:ASN28 4.8 10.6 1.0

A.Broom, A.C.Doxey, Y.D.Lobsanov, L.G.Berthin, D.R.Rose, P.L.Howell, B.J.Mcconkey, E.M.Meiering. Modular Evolution and the Origins of Symmetry: Reconstruction of A Three-Fold Symmetric Globular Protein. Structure V. 20 161 2012.
ISSN: ISSN 0969-2126
PubMed: 22178248
DOI: 10.1016/J.STR.2011.10.021