Atomistry » Sodium » PDB 3p2y-3pkh » 3pf4
Atomistry »
  Sodium »
    PDB 3p2y-3pkh »
      3pf4 »

Sodium in PDB 3pf4: Crystal Structure of Bs-Cspb in Complex with R(Gucuuua)

Protein crystallography data

The structure of Crystal Structure of Bs-Cspb in Complex with R(Gucuuua), PDB code: 3pf4 was solved by R.Sachs, K.E.A.Max, U.Heinemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.02 / 1.38
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.275, 50.512, 57.802, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 19.4

Other elements in 3pf4:

The structure of Crystal Structure of Bs-Cspb in Complex with R(Gucuuua) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Bs-Cspb in Complex with R(Gucuuua) (pdb code 3pf4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Bs-Cspb in Complex with R(Gucuuua), PDB code: 3pf4:

Sodium binding site 1 out of 1 in 3pf4

Go back to Sodium Binding Sites List in 3pf4
Sodium binding site 1 out of 1 in the Crystal Structure of Bs-Cspb in Complex with R(Gucuuua)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Bs-Cspb in Complex with R(Gucuuua) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na68

b:38.7
occ:1.00
NZ A:LYS39 2.4 26.7 1.0
O A:GLY37 2.6 18.5 1.0
O A:GLY35 3.1 27.4 1.0
CE A:LYS39 3.1 23.1 1.0
CG A:LYS39 3.4 19.6 1.0
N A:GLY37 3.6 22.2 1.0
C A:GLU36 3.6 23.6 1.0
C A:GLY37 3.7 18.3 1.0
CD A:LYS39 3.8 22.7 1.0
CA A:GLU36 3.9 24.9 1.0
C A:GLY35 4.0 22.8 1.0
O A:GLU36 4.1 24.2 1.0
O A:HOH151 4.2 39.2 1.0
CA A:GLY37 4.3 20.3 1.0
N A:GLU36 4.4 24.6 1.0
O A:HOH85 4.5 33.3 1.0
O A:HOH238 4.6 43.9 1.0
O A:HOH196 4.6 42.3 1.0
CB A:LYS39 4.8 17.8 1.0
O A:HOH87 4.8 23.2 1.0
N A:PHE38 4.9 17.5 1.0
N A:LYS39 4.9 16.4 1.0

Reference:

R.Sachs, K.E.Max, U.Heinemann, J.Balbach. Rna Single Strands Bind to A Conserved Surface of the Major Cold Shock Protein in Crystals and Solution. Rna V. 18 65 2012.
ISSN: ISSN 1355-8382
PubMed: 22128343
DOI: 10.1261/RNA.02809212
Page generated: Tue Dec 15 06:21:03 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy