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Sodium in PDB 3pbx: Strontium Bound to the Sequence D(Ccggcgccgg)

Protein crystallography data

The structure of Strontium Bound to the Sequence D(Ccggcgccgg), PDB code: 3pbx was solved by A.Naseer, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.86 / 1.88
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 64.890, 25.001, 37.044, 90.00, 110.01, 90.00
R / Rfree (%) 25.1 / 32.7

Other elements in 3pbx:

The structure of Strontium Bound to the Sequence D(Ccggcgccgg) also contains other interesting chemical elements:

Strontium (Sr) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Strontium Bound to the Sequence D(Ccggcgccgg) (pdb code 3pbx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Strontium Bound to the Sequence D(Ccggcgccgg), PDB code: 3pbx:

Sodium binding site 1 out of 1 in 3pbx

Go back to Sodium Binding Sites List in 3pbx
Sodium binding site 1 out of 1 in the Strontium Bound to the Sequence D(Ccggcgccgg)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Strontium Bound to the Sequence D(Ccggcgccgg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na27

b:23.0
occ:1.00
O B:HOH42 2.2 32.8 1.0
O B:HOH43 2.5 24.6 1.0
O B:HOH79 3.6 32.1 1.0
N2 B:DG14 4.5 16.6 1.0
N2 B:DG13 4.5 18.2 1.0
O B:HOH76 4.8 29.8 1.0
O B:HOH28 5.0 40.4 1.0

Reference:

A.Naseer, C.J.Cardin. Strontium Bound to the Sequence D(Ccggcgccgg) To Be Published.
Page generated: Mon Oct 7 12:12:20 2024

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