Sodium in PDB 3p7z: Crystal Structure of the Neurofibromin SEC14-pH Module Containing the Patient Derived Mutation I1584V

The structure of Crystal Structure of the Neurofibromin SEC14-pH Module Containing the Patient Derived Mutation I1584V, PDB code: 3p7z was solved by S.Welti, K.Scheffzek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.00 / 2.65
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	113.061, 113.061, 124.612, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 26.6

The binding sites of Sodium atom in the Crystal Structure of the Neurofibromin SEC14-pH Module Containing the Patient Derived Mutation I1584V (pdb code 3p7z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Neurofibromin SEC14-pH Module Containing the Patient Derived Mutation I1584V, PDB code: 3p7z:

Sodium binding site 1 out of 1 in the Crystal Structure of the Neurofibromin SEC14-pH Module Containing the Patient Derived Mutation I1584V


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Neurofibromin SEC14-pH Module Containing the Patient Derived Mutation I1584V within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1817 b:68.8 occ:0.50 OD1 A:ASN1582 3.2 58.0 1.0 O A:ALA1580 3.2 63.5 1.0 O A:GLY1581 3.5 63.1 1.0 ND2 A:ASN1582 3.6 55.7 1.0 CG A:ASN1582 3.6 55.3 1.0 C A:GLY1581 3.8 60.3 1.0 C A:ALA1580 4.0 55.4 1.0 CA A:GLY1581 4.2 42.3 1.0 O A:HOH117 4.3 51.5 1.0 N A:GLY1581 4.4 51.4 1.0 N A:ASN1582 4.5 57.0 1.0 CB A:ASN1582 4.9 52.0 1.0 CB A:ALA1580 4.9 48.6 1.0 CA A:ASN1582 5.0 50.0 1.0

S.Welti, S.Kuhn, I.D'angelo, B.Brugger, D.Kaufmann, K.Scheffzek. Structural and Biochemical Consequences of NF1 Associated Nontruncating Mutations in the SEC14-pH Module of Neurofibromin. Hum.Mutat. V. 32 191 2011.
ISSN: ISSN 1059-7794
PubMed: 21089070
DOI: 10.1002/HUMU.21405