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Sodium in PDB 3p2y: Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis

Enzymatic activity of Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis

All present enzymatic activity of Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis:
1.4.1.1;

Protein crystallography data

The structure of Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis, PDB code: 3p2y was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.15 / 1.82
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.760, 89.760, 179.570, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 19.6

Other elements in 3p2y:

The structure of Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis (pdb code 3p2y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis, PDB code: 3p2y:

Sodium binding site 1 out of 1 in 3p2y

Go back to Sodium Binding Sites List in 3p2y
Sodium binding site 1 out of 1 in the Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na364

b:32.7
occ:1.00
 O A:HOH533 2.3 26.9 1.0
O A:HOH556 2.5 45.1 1.0
O A:HOH600 2.6 54.1 1.0
O A:LYS244 2.7 15.2 1.0
O A:HOH720 2.7 41.8 1.0
O A:HOH579 3.0 30.6 1.0
C A:LYS244 3.7 15.3 1.0
OG A:SER165 4.3 14.4 0.5
O A:HOH539 4.4 35.8 1.0
CA A:LYS244 4.4 16.2 1.0
OD2 A:ASP246 4.6 10.7 1.0
O A:HOH689 4.7 35.1 1.0
CB A:LYS244 4.7 18.0 1.0
N A:PHE245 4.7 13.5 1.0
OD1 A:ASP246 4.7 10.8 1.0
O A:HOH474 4.9 32.5 1.0
CG A:ASP246 5.0 10.9 1.0
CA A:PHE245 5.0 12.1 1.0

Reference:

L.Baugh, I.Phan, D.W.Begley, M.C.Clifton, B.Armour, D.M.Dranow, B.M.Taylor, M.M.Muruthi, J.Abendroth, J.W.Fairman, D.Fox, S.H.Dieterich, B.L.Staker, A.S.Gardberg, R.Choi, S.N.Hewitt, A.J.Napuli, J.Myers, L.K.Barrett, Y.Zhang, M.Ferrell, E.Mundt, K.Thompkins, N.Tran, S.Lyons-Abbott, A.Abramov, A.Sekar, D.Serbzhinskiy, D.Lorimer, G.W.Buchko, R.Stacy, L.J.Stewart, T.E.Edwards, W.C.Van Voorhis, P.J.Myler. Increasing the Structural Coverage of Tuberculosis Drug Targets. Tuberculosis (Edinb) V. 95 142 2015.
ISSN: ISSN 1472-9792
PubMed: 25613812
DOI: 10.1016/J.TUBE.2014.12.003
Page generated: Mon Oct 7 12:11:25 2024

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