Sodium in PDB 3p1l: Crystal Structure of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals.

The structure of Crystal Structure of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals., PDB code: 3p1l was solved by K.H.Kim, M.Paetzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.00 / 2.60
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	101.710, 101.710, 108.780, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 23.3

The binding sites of Sodium atom in the Crystal Structure of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals. (pdb code 3p1l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals., PDB code: 3p1l:

Sodium binding site 1 out of 1 in the Crystal Structure of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na393 b:31.8 occ:1.00 N A:ARG154 3.0 37.7 1.0 O A:HOH406 3.0 34.1 1.0 CG A:GLU197 3.1 43.4 1.0 O A:HOH456 3.1 52.8 1.0 CD A:GLU197 3.3 52.0 1.0 O A:HOH446 3.4 35.7 1.0 CG A:ARG154 3.5 41.4 1.0 OE2 A:GLU197 3.6 56.1 1.0 CB A:ARG154 3.6 38.4 1.0 OE1 A:GLU197 3.8 57.0 1.0 CB A:GLU197 3.8 37.6 1.0 C A:SER153 3.9 37.3 1.0 CA A:ARG154 3.9 37.5 1.0 CA A:SER153 3.9 38.2 1.0 CD A:ARG154 4.0 47.0 1.0 CB A:SER153 4.1 38.7 1.0 CB A:ALA199 4.2 31.2 1.0 CE1 A:HIS64 4.6 35.4 1.0 N A:ALA199 4.6 32.8 1.0 CA A:GLU197 4.8 36.4 1.0 OG A:SER153 4.8 42.3 1.0 O A:ARG154 4.8 37.4 1.0 O A:HOH451 4.8 45.7 1.0 C A:ARG154 4.9 37.3 1.0 O A:HOH437 4.9 39.6 1.0 CA A:ALA199 4.9 32.8 1.0 NE A:ARG154 5.0 54.8 1.0 OE2 A:GLU370 5.0 60.5 1.0

K.H.Kim, M.Paetzel. Crystal Structure of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals J.Mol.Biol. V. 406 667 2011.
ISSN: ISSN 0022-2836
PubMed: 21168416
DOI: 10.1016/J.JMB.2010.12.020