Sodium in the structure of Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals. (pdb 3p1l)

The binding sites of Sodium atom in the structure of Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals. (pdb code 3p1l). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3p1l structure was solved by K.H.KIM, M.W.PAETZEL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 48.0-2.6 Space group P43212 a (A) 101.710 b (A) 101.710 c (A) 108.780 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.5 Rfree (%) 23.3 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3p1l Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3p1l. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His64, A: Ser153, A: Arg154, A: Glu197, A: Ala199, A: Glu370, A: Hoh406, A: Hoh437, A: Hoh446, A: Hoh451, A: Hoh456, conact list: Atom Atom Distance (A) Na CE1 A:His64 4.61 Na CB A:Ser153 4.12 Na OG A:Ser153 4.82 Na C A:Ser153 3.85 Na CA A:Ser153 3.86 Na O A:Arg154 4.83 Na N A:Arg154 2.96 Na CB A:Arg154 3.59 Na CD A:Arg154 4.03 Na C A:Arg154 4.88 Na CG A:Arg154 3.45 Na NE A:Arg154 4.95 Na CA A:Arg154 3.85 Na OE1 A:Glu197 3.80 Na CB A:Glu197 3.80 Na OE2 A:Glu197 3.56 Na CD A:Glu197 3.26 Na CG A:Glu197 3.07 Na CA A:Glu197 4.80 Na N A:Ala199 4.63 Na CB A:Ala199 4.17 Na CA A:Ala199 4.91 Na OE2 A:Glu370 4.97 Na O A:Hoh406 3.02 Na O A:Hoh437 4.90 Na O A:Hoh446 3.42 Na O A:Hoh451 4.85 Na O A:Hoh456 3.14 interactive model: