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Sodium in PDB 3owm: Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Hydroxylamine

Protein crystallography data

The structure of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Hydroxylamine, PDB code: 3owm was solved by A.A.Trofimov, K.M.Polyakov, K.M.Boyko, T.V.Tikhonova, V.S.Lamzin, G.P.Bourenkov, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 1.65
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 192.529, 192.529, 192.529, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 15.4

Other elements in 3owm:

The structure of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Hydroxylamine also contains other interesting chemical elements:

Iron (Fe) 16 atoms
Calcium (Ca) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Hydroxylamine (pdb code 3owm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Hydroxylamine, PDB code: 3owm:

Sodium binding site 1 out of 1 in 3owm

Go back to Sodium Binding Sites List in 3owm
Sodium binding site 1 out of 1 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Hydroxylamine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Hydroxylamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na4

b:32.5
occ:0.50
O A:HOH1098 2.4 43.5 1.0
O1D B:HEC1003 2.4 32.9 1.0
O A:HOH728 2.8 36.0 1.0
CGD B:HEC1003 3.4 30.4 1.0
CAD B:HEC1003 3.5 19.9 1.0
CBD B:HEC1003 3.7 25.2 1.0
CD1 A:LEU6 3.8 27.2 1.0
CG A:LEU6 3.8 26.2 1.0
O A:HOH1138 4.3 30.5 1.0
CB A:LEU6 4.5 25.2 1.0
O2D B:HEC1003 4.6 35.6 1.0
CMD B:HEC1003 4.6 15.4 1.0
N A:LEU6 4.6 26.5 1.0
C3D B:HEC1003 4.7 15.3 1.0
O A:HOH916 4.8 36.8 1.0
CG2 A:THR68 4.9 30.5 1.0
CE1 A:HIS37 5.0 16.1 1.0

Reference:

A.A.Trofimov, K.M.Polyakov, T.V.Tikhonova, V.O.Popov. Binding of Sulfite By the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase To Be Published.
Page generated: Tue Dec 15 06:20:33 2020

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