Sodium in PDB 3ot1: Crystal Structure of VC2308 Protein

The structure of Crystal Structure of VC2308 Protein, PDB code: 3ot1 was solved by E.Niedzialkowska, Z.Wawrzak, M.Chruszcz, P.Porebski, T.Skarina, X.Huang, S.Grimshaw, M.Cymborowski, A.Savchenko, W.F.Anderson, W.Minor, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.16
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.387, 64.683, 81.592, 90.00, 90.00, 90.00
R / Rfree (%)	14.4 / 16.8

The structure of Crystal Structure of VC2308 Protein also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of VC2308 Protein (pdb code 3ot1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of VC2308 Protein, PDB code: 3ot1:

Sodium binding site 1 out of 1 in the Crystal Structure of VC2308 Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of VC2308 Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Na207 b:8.3 occ:0.80 O B:GLY42 2.1 10.3 1.0 OE1 B:GLU62 2.3 8.6 1.0 OG1 B:THR60 2.3 10.8 1.0 O B:ALA40 2.3 5.8 1.0 O B:HOH335 2.4 11.6 1.0 C B:GLY42 3.2 7.7 1.0 CB B:THR60 3.3 8.2 1.0 N B:GLY42 3.3 6.3 1.0 CD B:GLU62 3.3 8.8 1.0 C B:ALA40 3.4 5.3 1.0 CA B:THR60 3.6 6.7 1.0 N B:LEU61 3.6 6.2 1.0 C B:VAL41 3.7 6.2 1.0 OE2 B:GLU62 3.8 10.3 1.0 CA B:GLY42 3.9 6.9 1.0 O B:HOH267 4.0 21.8 1.0 CA B:VAL41 4.0 5.7 1.0 C B:THR60 4.0 5.9 1.0 N B:VAL41 4.1 5.0 1.0 N B:ASP43 4.3 7.3 1.0 N B:GLU62 4.4 8.1 1.0 O B:HOH293 4.4 18.7 1.0 CA B:ALA40 4.4 5.3 1.0 O B:VAL41 4.5 6.5 1.0 CB B:ALA40 4.5 6.1 1.0 CG2 B:THR60 4.6 10.7 1.0 CG B:GLU62 4.6 10.5 1.0 CA B:LEU61 4.7 6.2 1.0 CA B:ASP43 4.7 8.7 1.0 CB B:LEU61 4.7 7.2 1.0 N B:ALA40 4.9 4.9 1.0 CB B:GLU62 4.9 9.8 1.0 N B:THR60 4.9 6.8 1.0 O B:LYS44 4.9 9.1 1.0

E.Niedzialkowska, Z.Wawrzak, M.Chruszcz, P.Porebski, T.Skarina, X.Huang, S.Grimshaw, M.Cymborowski, A.Savchenko, W.F.Anderson, W.Minor, Center For Structural Genomics Of Infectiousdiseases (Csgid). Crystal Structure of VC2308 Protein To Be Published.