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Sodium in PDB 3oq2: Structure of A Crispr Associated Protein CAS2 From Desulfovibrio Vulgaris

Protein crystallography data

The structure of Structure of A Crispr Associated Protein CAS2 From Desulfovibrio Vulgaris, PDB code: 3oq2 was solved by P.Samai, P.Smith, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.08 / 1.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 107.874, 48.810, 41.320, 90.00, 99.20, 90.00
R / Rfree (%) 12.8 / 17.7

Other elements in 3oq2:

The structure of Structure of A Crispr Associated Protein CAS2 From Desulfovibrio Vulgaris also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of A Crispr Associated Protein CAS2 From Desulfovibrio Vulgaris (pdb code 3oq2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Crispr Associated Protein CAS2 From Desulfovibrio Vulgaris, PDB code: 3oq2:

Sodium binding site 1 out of 1 in 3oq2

Go back to Sodium Binding Sites List in 3oq2
Sodium binding site 1 out of 1 in the Structure of A Crispr Associated Protein CAS2 From Desulfovibrio Vulgaris


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Crispr Associated Protein CAS2 From Desulfovibrio Vulgaris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na103

b:42.1
occ:1.00
HH A:TYR42 2.5 47.4 1.0
O A:PHE17 2.9 47.0 1.0
HG3 A:GLN23 2.9 58.4 1.0
HA A:GLN23 2.9 25.2 1.0
HE2 A:TYR42 3.0 31.1 1.0
OH A:TYR42 3.0 39.5 1.0
HB2 A:GLN23 3.0 36.5 1.0
O A:HOH127 3.1 22.9 1.0
CB A:PHE17 3.3 44.6 1.0
HD23 A:LEU26 3.4 22.7 1.0
O A:HOH279 3.5 39.2 1.0
C A:PHE17 3.5 46.5 1.0
CD1 A:PHE17 3.5 48.8 1.0
CB A:GLN23 3.5 30.4 1.0
CG A:GLN23 3.5 48.7 1.0
CE2 A:TYR42 3.7 25.9 1.0
OE1 A:GLN23 3.7 44.6 1.0
CA A:GLN23 3.7 21.0 1.0
CZ A:TYR42 3.8 28.8 1.0
CA A:PHE17 3.8 44.4 1.0
CG A:PHE17 3.8 46.7 1.0
CD A:GLN23 3.9 53.7 1.0
CD2 A:LEU26 4.3 18.9 1.0
HA A:GLU18 4.3 70.2 1.0
HB3 A:LEU26 4.4 15.7 1.0
HG2 A:GLN23 4.4 58.4 1.0
HB3 A:GLN23 4.5 36.5 1.0
N A:GLU18 4.5 48.3 1.0
HD22 A:LEU26 4.5 22.7 1.0
O A:GLN23 4.6 16.6 1.0
N A:GLN23 4.6 20.1 1.0
C A:GLN23 4.7 17.6 1.0
CE1 A:PHE17 4.7 49.3 1.0
HD21 A:LEU26 4.8 22.7 1.0
H A:GLN23 4.9 24.1 1.0
CD2 A:TYR42 4.9 22.3 1.0
CA A:GLU18 5.0 58.5 1.0

Reference:

P.Samai, P.Smith, S.Shuman. Structure of A Crispr-Associated Protein CAS2 From Desulfovibrio Vulgaris. Acta Crystallogr.,Sect.F V. 66 1552 2010.
ISSN: ESSN 1744-3091
PubMed: 21139194
DOI: 10.1107/S1744309110039801
Page generated: Tue Dec 15 06:20:18 2020

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