Atomistry » Sodium » PDB 3ogc-3p1l » 3opz
Atomistry »
  Sodium »
    PDB 3ogc-3p1l »
      3opz »

Sodium in PDB 3opz: Crystal Structure of Trans-Sialidase in Complex with the Fab Fragment of A Neutralizing Monoclonal Igg Antibody

Enzymatic activity of Crystal Structure of Trans-Sialidase in Complex with the Fab Fragment of A Neutralizing Monoclonal Igg Antibody

All present enzymatic activity of Crystal Structure of Trans-Sialidase in Complex with the Fab Fragment of A Neutralizing Monoclonal Igg Antibody:
3.2.1.18;

Protein crystallography data

The structure of Crystal Structure of Trans-Sialidase in Complex with the Fab Fragment of A Neutralizing Monoclonal Igg Antibody, PDB code: 3opz was solved by N.Larrieux, R.Muia, O.Campetella, A.Buschiazzo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.79 / 3.40
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 178.140, 178.140, 140.710, 90.00, 90.00, 120.00
R / Rfree (%) 16.4 / 20.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Trans-Sialidase in Complex with the Fab Fragment of A Neutralizing Monoclonal Igg Antibody (pdb code 3opz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Trans-Sialidase in Complex with the Fab Fragment of A Neutralizing Monoclonal Igg Antibody, PDB code: 3opz:

Sodium binding site 1 out of 1 in 3opz

Go back to Sodium Binding Sites List in 3opz
Sodium binding site 1 out of 1 in the Crystal Structure of Trans-Sialidase in Complex with the Fab Fragment of A Neutralizing Monoclonal Igg Antibody


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Trans-Sialidase in Complex with the Fab Fragment of A Neutralizing Monoclonal Igg Antibody within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na635

b:38.5
occ:1.00
 NZ A:LYS22 3.2 60.0 1.0
O A:ARG87 3.7 48.6 1.0
CB A:ARG87 4.0 46.5 1.0
CD A:ARG87 4.0 46.4 1.0
CA A:ARG87 4.1 46.1 1.0
C A:ARG87 4.3 47.7 1.0
CE A:LYS22 4.3 58.7 1.0
CD1 A:LEU62 4.5 39.6 1.0
CD A:LYS22 4.5 56.9 1.0
O A:SER89 4.5 47.4 1.0
CZ A:PHE20 4.6 57.9 1.0
CG A:ARG87 4.6 46.5 1.0
CD2 A:LEU62 4.7 39.8 1.0
CG A:LYS22 4.9 55.6 1.0

Reference:

A.Buschiazzo, R.Muia, N.Larrieux, T.Pitcovsky, J.Mucci, O.Campetella. Trypanosoma Cruzi Trans-Sialidase in Complex with A Neutralizing Antibody: Structure/Function Studies Towards the Rational Design of Inhibitors. Plos Pathog. V. 8 02474 2012.
ISSN: ISSN 1553-7366
PubMed: 22241998
DOI: 10.1371/JOURNAL.PPAT.1002474
Page generated: Tue Dec 15 06:20:22 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy