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Sodium in PDB 3oo2: 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col

Enzymatic activity of 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col

All present enzymatic activity of 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col:
5.1.1.1;

Protein crystallography data

The structure of 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col, PDB code: 3oo2 was solved by A.S.Halavaty, L.Shuvalova, G.Minasov, J.Winsor, I.Dubrovska, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.59 / 2.37
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.735, 118.310, 129.008, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 25.7

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col (pdb code 3oo2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col, PDB code: 3oo2:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 3oo2

Go back to Sodium Binding Sites List in 3oo2
Sodium binding site 1 out of 2 in the 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na383

b:56.2
occ:1.00
O A:LEU160 2.2 49.2 1.0
O A:TYR157 2.3 55.6 1.0
O A:ILE154 2.6 51.8 1.0
C A:LEU160 3.4 48.6 1.0
C A:TYR157 3.5 56.1 1.0
C A:ILE154 3.7 51.5 1.0
CG2 A:ILE154 3.9 45.8 1.0
CA A:GLU158 4.0 57.9 1.0
N A:LEU160 4.0 50.7 1.0
O A:GLU158 4.0 52.6 1.0
C A:GLU158 4.1 54.8 1.0
CA A:GLN155 4.1 57.3 1.0
CA A:LEU160 4.1 49.2 1.0
N A:GLU158 4.2 57.1 1.0
N A:GLN155 4.3 53.3 1.0
CB A:LEU160 4.3 48.6 1.0
N A:VAL161 4.4 47.5 1.0
C A:GLN155 4.5 58.1 1.0
N A:TYR157 4.6 57.1 1.0
CA A:TYR157 4.6 56.8 1.0
CA A:VAL161 4.6 46.9 1.0
CA A:ILE154 4.7 48.9 1.0
N A:GLN159 4.8 52.9 1.0
O A:GLN155 4.8 59.0 1.0
CB A:ILE154 5.0 47.5 1.0

Sodium binding site 2 out of 2 in 3oo2

Go back to Sodium Binding Sites List in 3oo2
Sodium binding site 2 out of 2 in the 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na383

b:61.7
occ:1.00
O B:ILE154 2.4 63.5 1.0
O B:LEU160 2.4 57.5 1.0
O B:HOH446 2.5 13.3 1.0
O B:TYR157 2.5 65.2 1.0
C B:ILE154 3.2 63.0 1.0
CG2 B:ILE154 3.5 56.6 1.0
C B:LEU160 3.6 55.8 1.0
C B:TYR157 3.6 67.3 1.0
CA B:GLN155 3.8 68.1 1.0
N B:GLN155 3.8 64.3 1.0
C B:GLN155 4.2 69.6 1.0
CA B:ILE154 4.3 60.4 1.0
O B:GLN155 4.3 70.5 1.0
CA B:LEU160 4.3 55.9 1.0
CA B:GLU158 4.3 71.2 1.0
N B:LEU160 4.4 59.0 1.0
N B:GLU158 4.4 70.2 1.0
CB B:LEU160 4.4 53.2 1.0
CB B:ILE154 4.4 58.5 1.0
N B:TYR157 4.4 69.2 1.0
C B:GLU158 4.5 69.0 1.0
O B:GLU158 4.5 69.2 1.0
CA B:TYR157 4.6 68.2 1.0
N B:VAL161 4.6 53.9 1.0
CA B:VAL161 4.7 54.2 1.0
N B:GLN156 4.9 69.5 1.0

Reference:

A.S.Halavaty, L.Shuvalova, G.Minasov, J.Winsor, I.Dubrovska, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col To Be Published.
Page generated: Tue Dec 15 06:20:14 2020

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