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Sodium in PDB 3okf: 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae

Enzymatic activity of 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae

All present enzymatic activity of 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae:
4.2.3.4;

Protein crystallography data

The structure of 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae, PDB code: 3okf was solved by G.Minasov, S.H.Light, L.Shuvalova, L.Papazisi, W.F.Anderson, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.62 / 2.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.140, 80.140, 262.965, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.3

Other elements in 3okf:

The structure of 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae also contains other interesting chemical elements:

Chlorine (Cl) 7 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae (pdb code 3okf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae, PDB code: 3okf:

Sodium binding site 1 out of 1 in 3okf

Go back to Sodium Binding Sites List in 3okf
Sodium binding site 1 out of 1 in the 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na375

b:43.0
occ:0.50
 O A:LEU288 2.4 60.2 1.0
O A:THR340 2.4 56.4 1.0
O A:HOH381 2.7 47.6 1.0
C A:THR340 3.4 55.9 1.0
C A:LEU288 3.4 60.4 1.0
CA A:THR340 4.1 55.5 1.0
CA A:LEU288 4.3 61.6 1.0
N A:ILE289 4.3 59.6 1.0
CB A:THR340 4.4 56.3 1.0
CA A:ILE289 4.4 58.7 1.0
N A:SER341 4.4 55.4 1.0
O A:HOH379 4.5 55.1 0.5
O A:GLY287 4.6 65.0 1.0
CB A:SER341 4.7 56.4 1.0
CA A:SER341 4.8 56.1 1.0

Reference:

G.Minasov, S.H.Light, L.Shuvalova, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae. To Be Published.
Page generated: Tue Dec 15 06:20:05 2020

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