Sodium in PDB 3oc4: Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583

The structure of Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583, PDB code: 3oc4 was solved by D.Kumaran, K.Baumann, S.K.Burley, S.Swaminathan, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.13 / 2.60
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	213.693, 213.693, 149.259, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 25.1

The binding sites of Sodium atom in the Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583 (pdb code 3oc4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583, PDB code: 3oc4:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:35.3 occ:1.00 O A:GLY342 2.3 43.4 1.0 O A:GLN347 2.3 38.3 1.0 O A:HOH540 2.4 24.1 1.0 O A:PHE345 2.5 33.4 1.0 O A:HOH541 2.5 24.6 1.0 C A:PHE345 3.4 35.4 1.0 C A:GLY342 3.5 44.4 1.0 C A:GLN347 3.5 39.7 1.0 N A:PHE345 4.0 36.1 1.0 CA A:PHE345 4.0 35.6 1.0 C A:PRO346 4.1 38.9 1.0 CB A:PHE345 4.2 35.9 1.0 N A:GLN347 4.2 39.6 1.0 O A:PRO346 4.2 39.9 1.0 CA A:GLY342 4.3 44.2 1.0 N A:PRO346 4.4 37.0 1.0 N A:LEU343 4.4 43.5 1.0 N A:LEU349 4.4 36.8 1.0 N A:THR348 4.4 39.4 1.0 CA A:GLN347 4.4 40.4 1.0 CA A:THR348 4.5 38.7 1.0 CA A:LEU343 4.5 42.3 1.0 C A:LEU343 4.6 40.7 1.0 CA A:PRO346 4.7 38.2 1.0 O A:HOH486 4.7 33.1 1.0 CG A:LEU349 4.7 37.4 1.0 O A:LEU343 4.8 38.9 1.0 C A:THR348 5.0 38.1 1.0 N A:PHE344 5.0 39.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na501 b:45.9 occ:1.00 O B:PHE345 2.1 51.4 1.0 O B:HOH547 2.2 25.4 1.0 O B:GLN347 2.5 50.8 1.0 O B:GLY342 2.6 41.9 1.0 C B:PHE345 3.3 52.4 1.0 C B:GLN347 3.5 51.8 1.0 C B:GLY342 3.6 43.9 1.0 CA B:LEU343 3.9 47.0 1.0 N B:PHE345 4.0 52.5 1.0 CA B:PHE345 4.0 51.9 1.0 O B:PRO346 4.0 52.6 1.0 C B:PRO346 4.0 53.1 1.0 C B:LEU343 4.1 48.4 1.0 O B:LEU343 4.2 49.0 1.0 N B:LEU343 4.2 45.3 1.0 N B:GLN347 4.2 53.2 1.0 CB B:PHE345 4.3 50.8 1.0 CA B:THR348 4.3 49.4 1.0 N B:PRO346 4.3 52.6 1.0 N B:THR348 4.3 50.5 1.0 N B:LEU349 4.5 46.8 1.0 CA B:GLN347 4.5 53.3 1.0 CA B:PRO346 4.5 53.3 1.0 CG B:LEU349 4.6 44.7 1.0 CA B:GLY342 4.7 42.4 1.0 O B:HOH478 4.7 35.5 1.0 N B:PHE344 4.8 50.7 1.0 C B:THR348 4.8 48.3 1.0

D.Kumaran, K.Baumann, S.K.Burley, S.Swaminathan. Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583 To Be Published.