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Sodium in PDB 3obp: Anaerobic Complex of Urate Oxidase with Uric Acid

Enzymatic activity of Anaerobic Complex of Urate Oxidase with Uric Acid

All present enzymatic activity of Anaerobic Complex of Urate Oxidase with Uric Acid:
1.7.3.3;

Protein crystallography data

The structure of Anaerobic Complex of Urate Oxidase with Uric Acid, PDB code: 3obp was solved by L.Gabison, C.Chopard, N.Colloc'h, M.El Hajji, B.Castro, M.Chiadmi, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.50
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 79.853, 96.290, 105.737, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 24.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Anaerobic Complex of Urate Oxidase with Uric Acid (pdb code 3obp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Anaerobic Complex of Urate Oxidase with Uric Acid, PDB code: 3obp:

Sodium binding site 1 out of 1 in 3obp

Go back to Sodium Binding Sites List in 3obp
Sodium binding site 1 out of 1 in the Anaerobic Complex of Urate Oxidase with Uric Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Anaerobic Complex of Urate Oxidase with Uric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na850

b:23.8
occ:1.00
O A:HOH1140 2.4 39.5 1.0
O A:ILE94 2.4 17.3 1.0
O A:ILE88 2.4 26.8 1.0
O A:TYR91 2.6 18.6 1.0
OE1 A:GLU136 2.7 31.7 1.0
O A:ASN92 3.3 25.3 1.0
C A:ILE88 3.5 19.6 1.0
C A:ILE94 3.5 12.6 1.0
CD A:GLU136 3.6 47.7 1.0
C A:ASN92 3.7 22.5 1.0
C A:TYR91 3.7 21.4 1.0
CA A:ILE88 3.8 20.1 1.0
OE2 A:GLU136 3.8 66.2 1.0
CA A:ASN92 4.0 30.5 1.0
N A:ILE94 4.1 16.5 1.0
ND1 A:HIS95 4.1 27.7 1.0
CB A:ILE88 4.2 17.9 1.0
CA A:ILE94 4.3 16.9 1.0
N A:ASN92 4.4 21.4 1.0
N A:HIS95 4.5 17.2 1.0
N A:HIS93 4.5 18.3 1.0
CA A:HIS95 4.5 15.3 1.0
N A:GLU89 4.6 17.1 1.0
CE1 A:HIS95 4.7 20.5 1.0
O A:PHE87 4.8 20.4 1.0
CB A:ILE94 4.8 15.2 1.0
CG A:GLU136 4.9 38.4 1.0
CG2 A:ILE88 4.9 22.5 1.0
CA A:TYR91 4.9 16.6 1.0
N A:TYR91 4.9 17.9 1.0
C A:HIS93 4.9 14.8 1.0

Reference:

L.Gabison, C.Chopard, N.Colloc'h, F.Peyrot, B.Castro, M.E.Hajji, M.Altarsha, G.Monard, M.Chiadmi, T.Prange. X-Ray, Esr, and Quantum Mechanics Studies Unravel A Spin Well in the Cofactor-Less Urate Oxidase. Proteins V. 79 1964 2011.
ISSN: ISSN 0887-3585
PubMed: 21491497
DOI: 10.1002/PROT.23022
Page generated: Tue Dec 15 06:19:48 2020

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