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Sodium in PDB 3oam: Crystal Structure of Cytidylyltransferase From Vibrio Cholerae

Enzymatic activity of Crystal Structure of Cytidylyltransferase From Vibrio Cholerae

All present enzymatic activity of Crystal Structure of Cytidylyltransferase From Vibrio Cholerae:
2.7.7.38;

Protein crystallography data

The structure of Crystal Structure of Cytidylyltransferase From Vibrio Cholerae, PDB code: 3oam was solved by J.Hattne, D.Borek, S.Grimshaw, C.Nakka, R.Rostankowski, Z.Otwinowski, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.06 / 1.75
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 58.928, 68.209, 71.476, 82.73, 74.19, 76.97
R / Rfree (%) 19.8 / 23.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Cytidylyltransferase From Vibrio Cholerae (pdb code 3oam). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Cytidylyltransferase From Vibrio Cholerae, PDB code: 3oam:

Sodium binding site 1 out of 1 in 3oam

Go back to Sodium Binding Sites List in 3oam
Sodium binding site 1 out of 1 in the Crystal Structure of Cytidylyltransferase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cytidylyltransferase From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na253

b:27.7
occ:1.00
O A:GLU249 2.2 28.9 1.0
O A:HOH301 2.4 30.7 1.0
O A:GLN252 2.4 37.5 1.0
O A:HOH413 2.5 29.6 1.0
C A:GLU249 3.3 28.4 1.0
C A:GLN252 3.5 38.5 1.0
N A:GLN252 4.1 37.0 1.0
N A:ARG250 4.1 28.9 1.0
CA A:ARG250 4.2 30.9 1.0
CA A:GLN252 4.2 38.1 1.0
CA A:GLU249 4.2 27.5 1.0
CB A:GLU249 4.3 26.9 1.0
CB A:GLN252 4.4 38.2 1.0
C A:ARG250 4.5 32.7 1.0
OE1 A:GLU249 4.8 30.7 1.0
N A:ALA251 4.8 33.8 1.0
O A:ARG250 4.9 34.2 1.0

Reference:

J.Hattne, D.Borek, S.Grimshaw, C.Nakka, R.Rostankowski, Z.Otwinowski, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Cytidylyltransferase From Vibrio Cholerae To Be Published.
Page generated: Tue Dec 15 06:19:47 2020

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